Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g00021 ATGAAACATTTAACGAGGAACGAAAACAACGGTCATAGAATAATCACTTTTCCTGCAACGGCGCAAATGTTGAAGAGAGAACAATGTAACCACACTAAACATGATTCTACCTTCTCTCATTGGAAGATTCTTGTTGGTCCTTCTGATTGGGAGGATTATTCCAAAGGAAAAGAGGGATCTACAAGATACAGAATTCATAACCTGCCAGAGAATCCGGGTCCGGGAGTGTATGAGCTTGGAGTAGCTGTGTCGACTAGTGGTTTAGGGCGTGAAATTTACAAGCTTGCAACTCGCGTTGTTGTGGTTTATCTAGGAAAAGCTGATAATGTGAGAACAAGACTTCAAAGTTATGGTAGAAATGGAGCTCATTTGGGTAACGGTTGTTCTTCGTTTGAATCTTCGGATCAATTGGGACATTCATTGTTTCATGAGATTTTTTTTCAAGGCTTCCCAGTTGTTTATCGATGGGCTCCTATGCAGAACAAAGGAGATGCATTGCAAACAGAATCTCAACTTCTAAGTACATTTGATTATGCATGGAACACGATTAATAACGGCACGCGTCGGCCTGATGATATTCTTCAAATGCTCAACAAAATTTCTTCAGGGACAAGAACATTTTCAGAAGTGGCCAAATCACTTCTACCCTTCACTCAAAAGAAAGTTGGGATACAAATTAAGTCAAGCAGATTGCCCGTGGTAGATAACAAAACGGATGAGGCAGACAATGGCAGCTACAATTTCTTATCTCGCGTGTTCAAATTCAACCGGTCGCGTCCTAAAATAGTGGTTCATGATACAAGTGATTTTGCGGTTGAGAAGAATGGTAAAATTTGTGGAGTGATTTTAGACGATGGTTCTATTTGTACAAAGACGCCGGTTGAAAAAAGAGTTAGGTGTCACGAACATAAAGGAATGAGAGTTAATATGGTCAGTACAAAAGGAATGAGAAGATCCAAATCAGAATCAGAAAGAGTGTTCCCTGCAAAAGAAATAAGAAGATCCAAGTCAGAATCAGAAAAAGTGGGTGAAAGTCTTGTTGCTGAAAGTATCACCAAAACTGTTGTTATATGTGGAATTGTTTTGGAAGATGGATCAAGTTGTAGAAAAGAACCAGTTAAAGGAAGAAAAAGATGTCATGAACATAAAGGGAGGAGAATTCGTGCATCTGTTAGTATAAATCAGAAATAA 1191 0.3896 MKHLTRNENNGHRIITFPATAQMLKREQCNHTKHDSTFSHWKILVGPSDWEDYSKGKEGSTRYRIHNLPENPGPGVYELGVAVSTSGLGREIYKLATRVVVVYLGKADNVRTRLQSYGRNGAHLGNGCSSFESSDQLGHSLFHEIFFQGFPVVYRWAPMQNKGDALQTESQLLSTFDYAWNTINNGTRRPDDILQMLNKISSGTRTFSEVAKSLLPFTQKKVGIQIKSSRLPVVDNKTDEADNGSYNFLSRVFKFNRSRPKIVVHDTSDFAVEKNGKICGVILDDGSICTKTPVEKRVRCHEHKGMRVNMVSTKGMRRSKSESERVFPAKEIRRSKSESEKVGESLVAESITKTVVICGIVLEDGSSCRKEPVKGRKRCHEHKGRRIRASVSINQK 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g00021 396 SMART uri_9 92 186 IPR000305 -
Vivi4g00021 396 Pfam GIY-YIG domain-containing protein 38 194 - -
Vivi4g00021 396 PANTHER PROTEIN EFFECTOR OF TRANSCRIPTION 2-RELATED 351 390 IPR038909 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g00021 Vivi-Chr4 192979 195274 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g00021 15 389 HRT Transcription Factor Family AT5G56780 40.674 2.15e-90 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HRT Vivi4g00021 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g00021 - - lang:109350609 438.343