Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi49g00022 ATGGAGAATAATGGTCGAGTATGCACCATTTGTAATAGGTTCTTTTCTAATGGGAAGGCTTTGGGAGGCCACATAAAATCCCACTATTCCAAATTACCAATCCCTCCAAAACCTCCATTAAGTAGGCAAGTACCTGAATATTCAGTAGAGTCAACCCAACCTCCAAATCACTTTATCACCACATCTTCCTTATCAACTACAAATACAAGAAATAACTCCATACACAATCTTAGATCTTTGAAAAGAAACTGCTATTATAACCTAGAAAACTTTGGTAGGAAAATTGTGTTCGAGTTTTATCCAAAAAAACCAACTGGAAAAAGATCGAAACGCAGTCGTAGACAATTCAATGTGATTGAAGAAAAAGAAAAGAATACCCAAATTAGCGTGGCTGGAGAAAAAGAAGAGAATGCACAATTTAATGTCGCTGAAGAAAATGAAGAGAGCATACAATTTCAATTAGTGTATGATGATCATGATATGGAAGCTGCTAAAACACTGGTTATTATTTCTGCGAAAGAATGGCAACATATCGAGGAGAAATACTATCAAAAGAAGGCAAAAGTTTGTGAAAGTGATCCCGTTGGATTTAAGTGTGATATTTGTCATGAAGTGTTTCAATCTCATCAAGATTTTGTTGGACATGATAAAATGCATAAGGAAAGTAATAATCTATATGAAGAAGTCAGCGTAAGTGGAAACGAAGATGATATTGTATATGCAGAAGTGCATAAGTGTATGTATTGCTTCGAAATCTTTGAATGTGATGAATTACTTGAGAAACACAGGAAGGGCATTCATGTAATGAGGAAAATAGTTGCTCAACCTAGATTTAGGTTTTTAAACAATGTGGTGGAACAAGCAGATTATGCAAAGGAGAAGCTTAGCAGGAACTTGTTTAATACTGAGTTGATGCAAGAAGTGGAGAGGATAACGGGTAAATTTATACAGGCTACTGAAGAAGAGGAAAAACTTCTCAGACAAAGATCTAAAGTTGATTAG 1002 0.3523 MENNGRVCTICNRFFSNGKALGGHIKSHYSKLPIPPKPPLSRQVPEYSVESTQPPNHFITTSSLSTTNTRNNSIHNLRSLKRNCYYNLENFGRKIVFEFYPKKPTGKRSKRSRRQFNVIEEKEKNTQISVAGEKEENAQFNVAEENEESIQFQLVYDDHDMEAAKTLVIISAKEWQHIEEKYYQKKAKVCESDPVGFKCDICHEVFQSHQDFVGHDKMHKESNNLYEEVSVSGNEDDIVYAEVHKCMYCFEIFECDELLEKHRKGIHVMRKIVAQPRFRFLNNVVEQADYAKEKLSRNLFNTELMQEVERITGKFIQATEEEEKLLRQRSKVD 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi49g00022 333 ProSitePatterns Zinc finger C2H2 type domain signature. 246 267 IPR013087 -
Vivi49g00022 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Vivi49g00022 333 SMART c2h2final6 6 28 IPR013087 -
Vivi49g00022 333 SMART c2h2final6 244 267 IPR013087 -
Vivi49g00022 333 SMART c2h2final6 197 219 IPR013087 -
Vivi49g00022 333 Pfam C2H2-type zinc finger 197 221 - -
Vivi49g00022 333 Pfam C2H2-type zinc finger 7 30 - -
Vivi49g00022 333 ProSitePatterns Zinc finger C2H2 type domain signature. 199 219 IPR013087 -
Vivi49g00022 333 SUPERFAMILY beta-beta-alpha zinc fingers 7 219 IPR036236 -
Vivi49g00022 333 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Vivi49g00022 333 MobiDBLite consensus disorder prediction 33 56 - -
Vivi49g00022 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 197 224 IPR013087 -
Vivi49g00022 333 ProSiteProfiles Zinc finger C2H2 type domain profile. 244 272 IPR013087 -
Vivi49g00022 333 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 281 IPR044303 GO:0006355
Vivi49g00022 333 Gene3D Classic Zinc Finger 193 275 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi49g00022 8 287 C2H2 Transcription Factor Family AT3G60580 25.667 1.80e-15 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vivi49g00022 zf-C2H2_6 0.0012 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi49g00022 - - vvo:131622706 664.84