Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi49g00002 ATGTTCGTAGTTATGGATTCCATGGAAAAAACCTCTGAAAAGTGCTTAGATTCACAACTATGGCATGCCTGTGCTGGTGCCATGGTTCAAATGCCACCACTCAACACAAAAGTCTTTTACTTCCCACAAGGTCACGCTGAGCACGCTCATGGCAAAGTAGATTTCACCAAAACGCGCGTTCCTCCGCTTATCCTTTGTAGAATCTCCGCCATGAAATACATGGCTGACCCTGATACAGATGAAGTGTATGTCAAAATGAGGTTAACCCCTTTGAGAGAAAACGAGATGGATTTGGAACAAGATTGTTTCTTTGGAAAGAATGGCTTAGAGGGTCAAGAAAAGCCAGCTTCTTTTGCGAAGACGTTGACACAATCTGATGCCAACAATGGTGGAGGGTTCTCAGTTCCGAGATACTGCGCTGAGACTATTTTTCCTAGATTGGATTACTCTGCAGAGCCACCTGTTCAGACGATTATCGCTAAGGATATGCATGGACAGTGTTGGAAGTTTCGGCATATCTATAGAGGAACACCGAGGAGACATCTTTTGACTACTGGTTGGAGTAATTTCGTGAATCATAAGAAGCTTGTTGCTGGTGACTCGATTGTATTTTTGAGAGCTGAAAATGGAGATCTTTGTGTTGGTATAAGGAGAGCTAAGAAGGGTGGAATCGGCGGTGGAACGGATCAGTTTTCGAATTCTTCTGGTAATTGGAACCGTGTGTCATCATCATCACCTTTGTTTGGTGGTGGTTTCTTGTGTGGAAATGAGAATAGAAAAAGTGATTCTTTGATAGGAAAAGTTGCTTCTGAGTCAGTTGTTGAAGCTGTGAACTGTGCTGTGAATGGAAGATCTTTTGAGGTTGTGTATTATCCAAGAGCTAGTACTCCTGAGTTTTGTGTTAAGGTTTCTTCTGTTAAATCTGCAATGCAAATTCAATGGTGTTCTGGTATGAGATTCAAAATGCCTTTTGAAACTGAAGATTCTTCTAGAATCAGTTGGTTTATGGGAACTATTTCTTCTGTTAAAGTTCAAGATCCAATTCGTTGGCCTGATTCTCCTTGGCGTCTTCTTCAGGTAGTGTGGGATGAACCAGATTTACTTCAAAATGTGAAATGTGTAAACCCTTGGTTAGTTGAACTAGTTTCAAACATGCCGAATTTCAACCTCTCGCCATTCACGCCACCGAGAAAGAAACCGAGGTTTATCCAAGATCCATATTTTCATCTCATAAACCAACTTCCAATGCCAACAACGACAACAACATCATCAACACCGTCGTTCTCCAACATTAATCTTCTCAATTACGCGAACTCGTCTCTCTGTAACATTCAAGATAGTACTACGACTAATAGTTACTCTGCATCAAGCATACAGGGAGCCAGGCATGCTCAATTTGGACAAAATAACCAATCTGATTTTCCCTTCAACAAGCTTCACCATGACATGTTTCTTAGTAATTTGTCACTGTCGAGATTCGATCAACAACAAACTATTATTAGGCCCTACAAGAGTATCAACAACAATACTAAGAACACAGTTGACCTGTCTTGCTTGTTGAGTGTGGGAAATTCTGGTCAAAGTTTTAAGGAAGTATCCAATATTGAAGCAAAAGCACCCCACAAACATATTTTGTTGTTTGGAAAACTCATTCAAACCGAAGACAACAACAACGGTTCGAATATTTCAAAGAGCGGTTCTTTATCCGAAGGAGCTTCTTTGAAAACATCAAACATTTCTTCTTCTGAACCAGTTGAGAATTCTTCTGATGGAGGGTCACCTTTGTATAAGGATCAACAACAACATAAGACTGATATTGTTGGAACAGAAAATGTTACAACATTGTGCATGGCTTCATAA 1860 0.4032 MFVVMDSMEKTSEKCLDSQLWHACAGAMVQMPPLNTKVFYFPQGHAEHAHGKVDFTKTRVPPLILCRISAMKYMADPDTDEVYVKMRLTPLRENEMDLEQDCFFGKNGLEGQEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTIIAKDMHGQCWKFRHIYRGTPRRHLLTTGWSNFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKKGGIGGGTDQFSNSSGNWNRVSSSSPLFGGGFLCGNENRKSDSLIGKVASESVVEAVNCAVNGRSFEVVYYPRASTPEFCVKVSSVKSAMQIQWCSGMRFKMPFETEDSSRISWFMGTISSVKVQDPIRWPDSPWRLLQVVWDEPDLLQNVKCVNPWLVELVSNMPNFNLSPFTPPRKKPRFIQDPYFHLINQLPMPTTTTTSSTPSFSNINLLNYANSSLCNIQDSTTTNSYSASSIQGARHAQFGQNNQSDFPFNKLHHDMFLSNLSLSRFDQQQTIIRPYKSINNNTKNTVDLSCLLSVGNSGQSFKEVSNIEAKAPHKHILLFGKLIQTEDNNNGSNISKSGSLSEGASLKTSNISSSEPVENSSDGGSPLYKDQQQHKTDIVGTENVTTLCMAS 619
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi49g00002 619 CDD B3_DNA 117 218 IPR003340 GO:0003677
Vivi49g00002 619 ProSiteProfiles B3 DNA-binding domain profile. 118 220 IPR003340 GO:0003677
Vivi49g00002 619 MobiDBLite consensus disorder prediction 561 604 - -
Vivi49g00002 619 FunFam Auxin response factor 314 387 - -
Vivi49g00002 619 SUPERFAMILY DNA-binding pseudobarrel domain 112 219 IPR015300 -
Vivi49g00002 619 Pfam Auxin response factor 276 359 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi49g00002 619 SMART B3_2 118 220 IPR003340 GO:0003677
Vivi49g00002 619 Gene3D - 116 220 IPR015300 -
Vivi49g00002 619 FunFam Auxin response factor 116 220 - -
Vivi49g00002 619 Gene3D - 313 387 - -
Vivi49g00002 619 Pfam B3 DNA binding domain 118 219 IPR003340 GO:0003677
Vivi49g00002 619 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 13 590 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi49g00002 1 597 B3 DNA Binding Superfamily AT4G30080 53.526 0.0 597
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi49g00002 B3 5.7e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi49g00002 - - tpra:123919517 1074.69