Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi49g00001 ATGGTTGGACCAAACTTCATGGACGAGATTGACTGTGGTAGCTTCTTTGACCACATCGACGATTTGCTCGATTTCCCCGTCGACGACGTCGATGCCACCGCCGCCGCTTCGCTGTCGACCGTCACCTCCGCCGCGAACTGCAACTCACTGGCGAGTATTTGGCCTAATGAGTCTGACTCGTTTCCTGCCTCTGACTCGGTGTTTTCCGGCAACAGTCCTTCTGACCTCTCGGTGGAGCTTTCCGTTCCGTATGAAGACATTCTTCCATTGGAATGGCTGTCAACTTTTGTGGAGGACTCATTTTCTGAGGGGAGTCTCACAATGAAGAAAGTTGAGCAACCACCATCATCATGTGTCACCACTAAGGAGGACTCTGTGCATAACCAATTCCAGACATCAAGTCCAGTTTCTGTCCTTGAAAGCAGCAGTTCCTGCTCTGGCGGAAAGACGATGACGCCAGCAGGGATTTACATCCCAGTGCCTTGTGGACGTGCACGCACCAAGCGTCCACGTCCTGCAACCTTCAACCCCCGTTCCGCCATGCAGCTCATTTCCCCTACTTCCTCTTCTGTTGGGGAGAATGTGCAGCCTAATGTTATCTCCACCAAGGCGGCTGCATCGTCAGATTTTGACAATTTTGCTGAGTCTCAAATTGTAGCCAAGAAACCAAAGCTCCCTTCTGGAGAACCTAAGAAGAAAAAGAAGATCAAAATGCCGCTTCCTGCTGCTCCGGCTGACAGCGGCGATCAGAATGGTTCGCTGCCTGTTAGGAAATGCATGCATTGTGAAATAACCAAGACACCACAATGGAGGGCAGGTCCATTGGGGCCGAAAACACTCTGCAATGCTTGTGGCGTGCGCTACAAGTCAGGTCGGCTTTTCCCTGAATACCGTCCTGCTGCCAGTCCAACCTTTTGTCCTTCATTGCACTCCAATTCTCACAAGAAGGTCCTTGAAATGAGAACCAAGGACAGTGATAGCTCTGGTTTTGAATCACATTCAGCTGCCTCTCCAGAACTCATCCCAAACACTAACAGCATTCTCGCCCTGGAATACATTTGA 1062 0.5066 MVGPNFMDEIDCGSFFDHIDDLLDFPVDDVDATAAASLSTVTSAANCNSLASIWPNESDSFPASDSVFSGNSPSDLSVELSVPYEDILPLEWLSTFVEDSFSEGSLTMKKVEQPPSSCVTTKEDSVHNQFQTSSPVSVLESSSSCSGGKTMTPAGIYIPVPCGRARTKRPRPATFNPRSAMQLISPTSSSVGENVQPNVISTKAAASSDFDNFAESQIVAKKPKLPSGEPKKKKKIKMPLPAAPADSGDQNGSLPVRKCMHCEITKTPQWRAGPLGPKTLCNACGVRYKSGRLFPEYRPAASPTFCPSLHSNSHKKVLEMRTKDSDSSGFESHSAASPELIPNTNSILALEYI 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi49g00001 353 ProSitePatterns GATA-type zinc finger domain. 259 284 IPR000679 GO:0006355|GO:0043565
Vivi49g00001 353 ProSiteProfiles GATA-type zinc finger domain profile. 253 289 IPR000679 GO:0006355|GO:0043565
Vivi49g00001 353 FunFam GATA transcription factor 249 336 - -
Vivi49g00001 353 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 257 316 - -
Vivi49g00001 353 SMART GATA_3 253 303 IPR000679 GO:0006355|GO:0043565
Vivi49g00001 353 Pfam GATA zinc finger 259 292 IPR000679 GO:0006355|GO:0043565
Vivi49g00001 353 PANTHER GATA TRANSCRIPTION FACTOR 16 336 - -
Vivi49g00001 353 MobiDBLite consensus disorder prediction 221 252 - -
Vivi49g00001 353 Gene3D - 256 303 IPR013088 GO:0006355|GO:0008270
Vivi49g00001 353 CDD ZnF_GATA 258 305 IPR000679 GO:0006355|GO:0043565
Vivi49g00001 353 PIRSF Txn_fac_GATA_plant 3 346 IPR016679 GO:0003677|GO:0005634|GO:0045893
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi49g00001 13 326 C2C2-Gata Transcription Factor Family AT1G08010 35.604 3.96e-45 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi49g00001 GATA 3.4e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi49g00001 - - gmx:100815693 484.952