Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi498g00008 ATGAAGTTCCTACGCTCAGGTAACCAATTGGGGCCAACAGATGAAACATACCCTTCCTCTCAATCGCTTGTAACCAACGACTTCTTCTCAGCTAGCGGCCATTCTTTCCTTCCTGGAAAACTCGATCTTAAACCCGACACCGGCAATATAGAAGAAGCTGAATTATCTTTGCGCGAGAGTGGCGTATTGAACTATGAGGAAGCTAGAGCGCTGCTAGGAAGATATGAGTATCAGAAAGGAAATCTAGTAGCTGCTTTACATGTATTTGAGGGAATTGATATAGCTGTTGTGACTCCGAAGATCAAAATTGCGCTTTCGAGAAATGGAGAACGGAGAAAGAGGCATTCTCATAATCATGGTGAACCGGAAATGTCTATACATTCTGTTGGATTATTGTTGGAAGCACTTTTCCTAAAAACTAAATCTTTGCAGGCTCTTGAGAGATTTAAAGAAGCTGCTCAATCTTGCAAAGTTATTATGGACATAGTGGAATCTTCATTACCTGAAGGCTTGCCTGATAACTTTGGTGCTGAATGTAAATTGCAGGAGACCGTGAGCAAGGCAGTCGAGCTGCTTCCGGAGTTGTGGAAGCTTGCTGATTGTCCGCGTGAAGCTACTTTGTCTTACCGAAGAGCACTCCTTTATCAATGGAATCTTGATGCAGGGACTACAGCTAAGATTCAAAAGGAATTTGTTGTTTTTCTTCTATATAGTGGAGGGGAAGTAATGCCCCCTAATCTGCGTTCCCAAATGGACGGCTCGTTTGTACCGGGAAACAACATAGAAGAGGCCATACTTCTTTTAATGATTTTGCTAAGAAAAGTCTCTCTCAATAGAATCGAGTGGGATCCTTCAATTTTAGACCACCTTTCGTTTGCACTGTCTATTTCAGGAGGCCTGTCGAGTTTAGCCGATCATTTGGAAGAATTGCTCCCCGGGACTGTTCATCGAAGTGAAAGATTCTATGATCTAGCTCTCTGTTATTATGGGGCAGATAAGGACACAACGGCACTTGATCTACTAAGAAAATTGTTGCATGGTAGAGAAAGGCCAAAACATGCTTCTGGTTTGTTAATGGCTTCTAAGATTTGTTGTGAGAATCCTCCGCTTGCAGAAGAAGGGGTAAGCTTTGCTCAGAGAGCGGTCGAAAGCTTGGATGGAAAATGTACGCAGCTAGAAAATGTTGCCAAATTATATCTTGGTGTTTCATTATCGGCACATTCGAAATTAGCTGTTTCTGATTCTGAGAAGTTTGAGAGGCAATCTGAGGCACTTCAAGCCTTGGAAACTGCTGGTAGAATGACCAGAATGATAGACCCGCTAGTACTATACCATCTTAGCCTAGAATATGCAGAACAAAGGAAGTTGGATGACGCGCTTCATTATGCAAAGTACGTCGTAAAACTGGAAGGTGGTTCTAATGTTAAAGGATGGTTACTATTGGCACGGATATTATCTGCTAAAAAACAGTTCTTGGATGCGGAATCTATTATTAACGCTGCTTTGGATCAGACTGGGAAATGGGATCAAGGTGATTTGTTGCGAACAAAAGCTAAAATTCAAATTGCACAGAACCAGTTAAAGAATGCCATCGAGACATACACTCAGCTTCTTGCTGTTCTTCAAATTCAGAGAAAGAGTTTTGGTTCTTGGAAGAAGTTATACAAGGACAACCGAGATCGTGCTAGGAACTTGGAAGTGGAAATATGGCATGATCTTGCTCATGTATATATCAGTCTGTCCCAATGGCATGATGCAGAGACATGTCTTTCAAAATCTAAGGCCATCAAACCATACTCTGCTTCTAGATGTCATGCTCTAGGTATAATGTATGAAGCAAAGGGTCTTTACAAAGAAGCTCTAAAAGCTTTTGGTGATGCTTTAAACATTGATCCAGGCCATGTTCTGAGCTTAATCTCCACTGCTAAAGTACTTCGACATTGCAGTAATAAATCAAATCCTGCAGTCAGAAGTTTTTTGACGGATGCACTACGACACGATAGATTGAATGCTTCTGCTTGGTATAATCTTGGCCTCTTTCACAAAGCTGAGGGTACAATATCATCATTGGTTGAAGCTGCAGAGTGTTTTCAAGCAGCACAGTCTCTTGAAGAATCTGCTCCACTTGAACCTTTCAGATGA 2142 0.4164 MKFLRSGNQLGPTDETYPSSQSLVTNDFFSASGHSFLPGKLDLKPDTGNIEEAELSLRESGVLNYEEARALLGRYEYQKGNLVAALHVFEGIDIAVVTPKIKIALSRNGERRKRHSHNHGEPEMSIHSVGLLLEALFLKTKSLQALERFKEAAQSCKVIMDIVESSLPEGLPDNFGAECKLQETVSKAVELLPELWKLADCPREATLSYRRALLYQWNLDAGTTAKIQKEFVVFLLYSGGEVMPPNLRSQMDGSFVPGNNIEEAILLLMILLRKVSLNRIEWDPSILDHLSFALSISGGLSSLADHLEELLPGTVHRSERFYDLALCYYGADKDTTALDLLRKLLHGRERPKHASGLLMASKICCENPPLAEEGVSFAQRAVESLDGKCTQLENVAKLYLGVSLSAHSKLAVSDSEKFERQSEALQALETAGRMTRMIDPLVLYHLSLEYAEQRKLDDALHYAKYVVKLEGGSNVKGWLLLARILSAKKQFLDAESIINAALDQTGKWDQGDLLRTKAKIQIAQNQLKNAIETYTQLLAVLQIQRKSFGSWKKLYKDNRDRARNLEVEIWHDLAHVYISLSQWHDAETCLSKSKAIKPYSASRCHALGIMYEAKGLYKEALKAFGDALNIDPGHVLSLISTAKVLRHCSNKSNPAVRSFLTDALRHDRLNASAWYNLGLFHKAEGTISSLVEAAECFQAAQSLEESAPLEPFR 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi498g00008 713 Gene3D Tetratricopeptide repeat domain 565 709 IPR011990 GO:0005515
Vivi498g00008 713 Coils Coil 513 544 - -
Vivi498g00008 713 PANTHER PROTEIN NPG1 1 713 IPR043376 -
Vivi498g00008 713 ProSiteProfiles TPR repeat profile. 601 634 IPR019734 GO:0005515
Vivi498g00008 713 Pfam Tetratricopeptide repeat 448 504 - -
Vivi498g00008 713 Gene3D Tetratricopeptide repeat domain 258 564 IPR011990 GO:0005515
Vivi498g00008 713 SUPERFAMILY TPR-like 512 685 IPR011990 GO:0005515
Vivi498g00008 713 SMART tpr_5 511 544 IPR019734 GO:0005515
Vivi498g00008 713 SMART tpr_5 671 707 IPR019734 GO:0005515
Vivi498g00008 713 SMART tpr_5 318 351 IPR019734 GO:0005515
Vivi498g00008 713 SMART tpr_5 475 508 IPR019734 GO:0005515
Vivi498g00008 713 SMART tpr_5 133 166 IPR019734 GO:0005515
Vivi498g00008 713 SMART tpr_5 601 634 IPR019734 GO:0005515
Vivi498g00008 713 SMART tpr_5 440 473 IPR019734 GO:0005515
Vivi498g00008 713 SMART tpr_5 567 600 IPR019734 GO:0005515
Vivi498g00008 713 SUPERFAMILY TPR-like 442 540 IPR011990 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi498g00008 1 713 Calmodulin-binding Proteins AT4G28600 57.182 0.0 767
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi498g00008 K21843 - gmx:100792009 1117.83