Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi493g00016 ATGGTAATTCCAACACCCATCAATATCAATAATTATAATGATAATCAGACTTCTCCTTCTTCCAACTCGTCTCCACCGAGACTCTTTGGTTCATCTCTAACTTTAGGTCCTACTTTCAGAAGTAGATTACCAAATTTTGTAAGAGCAGAGAGTTCAAATCAAGGTTCACAAGTTGGTGGAACTTCAAAAAGACACACAAATCTTCCTCCTCATACTTTTCAACAAGAAAGTGTGAACAATAATAATTTCATGTCTTTTGAAGTAGGCTCATCTCCGTCCTCTCAAAGTCTAGGTAGGGGGTTTAGTGGTTATAACAACAACAATAACAACTACAACAATAACAACAATTTGGATTTATTTGATTCTATTCATGAGGGAATTGATGAGACATTTGTTCATAGCACCATAAATGCTCAACAACATGTAAGGCATTTACCAGAAGATCATGTGAGTCAATTTGTCACTCCATCTATTATTCATGTGCGGTCTAATAGTTCTGTACCACGACAACCACAACCTCTTTCCGATCCTTCGACAATTAGTTACCGCGTAAACCCTTCTCCACCTCCTCATGGACCAATGTTCAATACCGCTGAAGAATCTGATAATCACATGGTGACTGGTACAACATTGTCTAGATCTGGGAATCTTCGTCGCTATAATAATCACATTCTCACCTTAACCTCTCCTGAACTTATGAACGAGAGAAACAGACTTAGGGATGAGGTTTTGAGCACCCTACAACATCTGCAGAATGGTGGTTCCGTACGGATAGAGGATTTGTTGATACTAGATTACTCGATTGTGCTAAACGTTCTTGATTCTCAAGAACGTATCAACATGCTACATAGTATAGATGATTGGCCATATGAGGAAGACTATGTGGAAGGAGATATCACTGGAAGATTAGATTGTAGACACATATATCATTTTGAATGCATCAAACAATGGTTGCTGCAGAAGAATATTTGCCCAATCTGTAAGCACACAGCTCTGAGTGTTAATGAAGATGTGGATGAAAGGGATTGA 1029 0.3839 MVIPTPININNYNDNQTSPSSNSSPPRLFGSSLTLGPTFRSRLPNFVRAESSNQGSQVGGTSKRHTNLPPHTFQQESVNNNNFMSFEVGSSPSSQSLGRGFSGYNNNNNNYNNNNNLDLFDSIHEGIDETFVHSTINAQQHVRHLPEDHVSQFVTPSIIHVRSNSSVPRQPQPLSDPSTISYRVNPSPPPHGPMFNTAEESDNHMVTGTTLSRSGNLRRYNNHILTLTSPELMNERNRLRDEVLSTLQHLQNGGSVRIEDLLILDYSIVLNVLDSQERINMLHSIDDWPYEEDYVEGDITGRLDCRHIYHFECIKQWLLQKNICPICKHTALSVNEDVDERD 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi493g00016 342 ProSiteProfiles Zinc finger RING-type profile. 303 328 IPR001841 -
Vivi493g00016 342 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 11 333 IPR045191 GO:0061630
Vivi493g00016 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 340 IPR013083 -
Vivi493g00016 342 MobiDBLite consensus disorder prediction 50 76 - -
Vivi493g00016 342 Pfam Ring finger domain 293 328 IPR001841 -
Vivi493g00016 342 MobiDBLite consensus disorder prediction 1 35 - -
Vivi493g00016 342 SUPERFAMILY RING/U-box 292 332 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi493g00016 234 332 C3H Transcription Factor Family AT2G15530 27.815 8.63e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi493g00016 - - vvo:131632313 674.47