Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi493g00012 ATGGGTCATCAATTCCGTTTAACAAATTGGAATGAAGACGAGAGTCCAACTCGTGATGTTAGGGATCCAAGATATCTGATGGCCTCCTATTCTCTTCCTTCTCTTGCTTTTAACAATCACACAAGATCATTTGGGACCAATCATCAAGTCGTACTTGATAATATCATGCAAAACAATCCTCTTCACTCATACATTACGAATATTCAAGCTACTACTGATAATCATTATCATTCTACTATGGTAATTCCAACACCCATCAATATCAATAATTATAATGATAATCAGACTTCTCCTTCTTCCAACTCGTCTCCACCGAGACTCTTTGGTTCATCTCTAACTTTAGGTCCTACTTCCAGAAGTAGATTACCAAATTTTGTAAGAGGAGAGAGTTCAAATCAAGGTTCACAAGTTGGTGGAACTTCAAGAAGACACACAAATCTTCCTCCTCATACTTTTCAACAAGAAAGTGTGAACAATAATAATTTCATGTCTTTTGAAGTAGGCTCATCTCCGTCCTCTCAAAGTCTAGGTAGGGGGTTTAGTGGTTATAACCACAACAATAACAACTACAACAATAACAACAATTTGGATTTATTTGATTCTATTCATGAGGGAATTGATGAGATATTTGTTCATAGCACCATAAATGCTCAACAACATGTAAGGCATTTACCAGAAGATCATGTGAGTCAATTTGTCACTCCATCTATTGTTCATGTGCGGTCTAATAGTTCTGTACCACGACAACCACAACCTCCTTCCGATCCTTCGACAATTAGTTACCGCGTAAACCCTTCTCCACCTCCTCATGGACCAATGTTCAATACCGCTGAAGAATTTGATAATCACATGGTGACTGGTACAACATTGTCTAGATCTGGGAATCTTCGTCGCTATAATAATCACATTCTCACCTTAACCTCTCCTGAACTTATGAACGAGAGAAACAGACTTAGGGATGAGGTTTTGAGCACCCTACAACATCTGCAGAATGGTCGTTCCGTACGGATAGAGGATTTGTTGATACTAGATTACTCGATTGTGCTAAACGTTCTTGATTCTCAAGAACGTATCGACATGCTACATAGTATAGATGATTGGCCATATGAGGAAGACTATGCGGAAGGGGATATTACTGGAAGATTGGATTGTAGACACATATATCATTTTGAATGCATTAAACAATGGTTGCTGCAGAAGAATATTTGCCCAATCTGTAAGCACACAGCTCTGAGAGTTAATGAAGATGTGGATGAAAGAGATTGA 1266 0.3839 MGHQFRLTNWNEDESPTRDVRDPRYLMASYSLPSLAFNNHTRSFGTNHQVVLDNIMQNNPLHSYITNIQATTDNHYHSTMVIPTPININNYNDNQTSPSSNSSPPRLFGSSLTLGPTSRSRLPNFVRGESSNQGSQVGGTSRRHTNLPPHTFQQESVNNNNFMSFEVGSSPSSQSLGRGFSGYNHNNNNYNNNNNLDLFDSIHEGIDEIFVHSTINAQQHVRHLPEDHVSQFVTPSIVHVRSNSSVPRQPQPPSDPSTISYRVNPSPPPHGPMFNTAEEFDNHMVTGTTLSRSGNLRRYNNHILTLTSPELMNERNRLRDEVLSTLQHLQNGRSVRIEDLLILDYSIVLNVLDSQERIDMLHSIDDWPYEEDYAEGDITGRLDCRHIYHFECIKQWLLQKNICPICKHTALRVNEDVDERD 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi493g00012 421 SUPERFAMILY RING/U-box 371 410 - -
Vivi493g00012 421 MobiDBLite consensus disorder prediction 87 155 - -
Vivi493g00012 421 MobiDBLite consensus disorder prediction 240 260 - -
Vivi493g00012 421 Pfam Ring finger domain 373 407 IPR001841 -
Vivi493g00012 421 ProSiteProfiles Zinc finger RING-type profile. 382 407 IPR001841 -
Vivi493g00012 421 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 370 419 IPR013083 -
Vivi493g00012 421 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 371 411 IPR045191 GO:0061630
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi493g00012 313 413 C3H Transcription Factor Family AT2G15530 26.797 6.71e-14 71.6