Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi493g00007 ATGGCGAGTGGAATGCTAGAGATGTTTCTTGGAATTGCAAAGAATTGCTTTGGAGTTAAGAAGCTTGTAAGAATGGATCATCAATTCCGTTTAACAAATTGGAATGAAGACGAGAGCCCAACTCGTGATGTTAGGGATCCAAGATATTTGATGGCCTCCAATTCTCTTCCTTCTCTCGCTTTTAACAATCACACAAGATCATTTGGGACTAATCATCAAGTCGTACTTGATAATATCATGCAAAACAATCCTCTTCATCCTAATCATATTCCTCTTCACTCATACCTTACGAATAGTCAAGCTACTAATGATAATCATTATCATTCTACTATGGTAATTCCAACTCCCATCAATATCAATAATTATAATGATGATCAGACTTCTCCTTCTTCCAACTCGTCGCCACCGAGACTCTTTGGTTCATCTCTAACTTTAGCTCCTACTTCCAGAAGTAGATTACCAAATTTTGTAAGAGGAGAGAGTTCAAATCAAGGTTCACAAGTTGGTGGAACTTCAAGAAGACGCACAAATCCTCCTCCTCCTCATACTTTTCAACAAGAAAGTCTGAACAATAATAATTTCATGTCTTTTGAAGTAGGCTCATCTTCGTCCTCTCAAAGTCTAGGTAGGGGGTTTAGTTGTTATATCAACAGCAATAACAACTACAACAATAACAACAATTTGGATTTATTTGATTCTATTCAACAGGGAATTGATGATACATTTGTTCATAGCACCATAAATGCTCAACAACATGTAAGGCATTTACCAGAAGATCATGTGAGTCAATTTTTCACTCCATCTATTGTTCATGTGCGGTCTAATAGTTCTGTATCACGACAACCACAACCTCCTTCCGATCCTTCGACAATTAGTTACCGCGTAAACCCTTCTCCACCTCCTCATGGACCAATGTTCAATAATGCTGAAGAATATGATAATCACATGGTGACTGGTACAACATTGTCTAGATCTGGGAATCTTCGTCGCTATAATAATCACATTCTCACCTCAACCTCTCCTGAACTTATGAACGAGAGAAACAGACTTAGGGATGAGGTTTTTAGCACCCTGCAACATCTGCGGAATGGTGGTTCCGTACGGATAGAGGATTTGCTGATACTAGATTACTCGATTGTGCTAAACGTTCTTGATTCTCAAGAACGTATCGACATGCTACATAGTATAGATGATTGGCCATATGAGGAAGACTATGTGGAAAGGGATATCACTGGGAGGTTGGATTGTAGACACATATATCATTTTGAATGCATCAAACAATGGTTGCTGCTGAAGAATATTTGCCCAATATGTAAGCACACAGCTCTGAGAGTTAATGAAGATGTGGATGAAAGGGACTCATAA 1365 0.3861 MASGMLEMFLGIAKNCFGVKKLVRMDHQFRLTNWNEDESPTRDVRDPRYLMASNSLPSLAFNNHTRSFGTNHQVVLDNIMQNNPLHPNHIPLHSYLTNSQATNDNHYHSTMVIPTPININNYNDDQTSPSSNSSPPRLFGSSLTLAPTSRSRLPNFVRGESSNQGSQVGGTSRRRTNPPPPHTFQQESLNNNNFMSFEVGSSSSSQSLGRGFSCYINSNNNYNNNNNLDLFDSIQQGIDDTFVHSTINAQQHVRHLPEDHVSQFFTPSIVHVRSNSSVSRQPQPPSDPSTISYRVNPSPPPHGPMFNNAEEYDNHMVTGTTLSRSGNLRRYNNHILTSTSPELMNERNRLRDEVFSTLQHLRNGGSVRIEDLLILDYSIVLNVLDSQERIDMLHSIDDWPYEEDYVERDITGRLDCRHIYHFECIKQWLLLKNICPICKHTALRVNEDVDERDS 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi493g00007 454 Pfam Ring finger domain 405 439 IPR001841 -
Vivi493g00007 454 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 401 452 IPR013083 -
Vivi493g00007 454 MobiDBLite consensus disorder prediction 118 202 - -
Vivi493g00007 454 MobiDBLite consensus disorder prediction 273 301 - -
Vivi493g00007 454 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 403 443 IPR045191 GO:0061630
Vivi493g00007 454 SUPERFAMILY RING/U-box 403 442 - -
Vivi493g00007 454 MobiDBLite consensus disorder prediction 273 293 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi493g00007 345 445 C3H Transcription Factor Family AT2G15530 27.451 2.89e-14 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi493g00007 - - vvo:131632304 919.072