Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi491g00051 ATGGCGTCTGGAGATGTTGAGTACCGGTGCTTCGTCGGAGGTCTTGCATGGGCCACCGACAGTGAAGCTCTCGAGAAAGCTTTCTCATCTTACGGCGAAATCGTTGATTCGAAGATCATTAACGATCGTGAGACTGGAAGGTCAAGAGGTTTCGGATTTGTGACATTCGCTGATGAGAAATCAATGAGAGATGCTATTGAAGGGATGAATGGACAGAACATGGACGGGCGTAACATTACTGTTAACGAAGCTCAAAACCGTAACAGTGGTGGTGGTGGTGGAGGAGGTGGATATGGTGGTCGTCGTGAAGGTGGAGGTGGAGGATATGGTGGCCGCCGTGAAGGTGGAGGAGGATATGGTGGTGGAGGTGGTTATGGTGGTGGTAGGGACCGTGGTTATGGTAATGACGGTGGTGACCGCTATTCCCGTGGTGGTGGTGGTGGTGGCAACTGGAGGGAGTAG 462 0.5216 MASGDVEYRCFVGGLAWATDSEALEKAFSSYGEIVDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMNGQNMDGRNITVNEAQNRNSGGGGGGGGYGGRREGGGGGYGGRREGGGGYGGGGGYGGGRDRGYGNDGGDRYSRGGGGGGNWRE 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi491g00051 153 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Vivi491g00051 153 MobiDBLite consensus disorder prediction 73 89 - -
Vivi491g00051 153 PANTHER GEO13361P1-RELATED 5 147 - -
Vivi491g00051 153 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Vivi491g00051 153 SUPERFAMILY RNA-binding domain, RBD 8 144 IPR035979 GO:0003676
Vivi491g00051 153 MobiDBLite consensus disorder prediction 68 153 - -
Vivi491g00051 153 Gene3D - 2 126 IPR012677 -
Vivi491g00051 153 SMART rrm1_1 9 82 IPR000504 GO:0003723
Vivi491g00051 153 CDD RRM2_NsCP33_like 9 84 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi491g00051 10 88 Eukaryotic Initiation Factors Gene Family AT4G34110 35.443 1.70e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi491g00051 - K13195 ccaj:109800369 159.458