Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi491g00020 ATGCGATTCCCTTCCCCTCTAACGGTGGTTTCCACTCTAGCGGTGGTTTCCACCGTCTCTTCACTAGCCACCGCCGCCGCGTTGCTCCATTCCCTCCTTCATAACTACCTCCCACACGAACTCTACCACTACCTCCGCTCCAAGCTTTCTCAATTCACAACCTCACTCTCCAACGAACTCACCACCATAGTGATCGACGAATACGATCACGAAAACCTAGCCTACAACAGACTCTTCCAAGCCGCTGAGCTTTACCTCCATCCCGACATCGCTCAACACCCTAAGCGATTCAAAGCCGTACTGCGACCTAAGGAGAAGAACATCTCCGTCGTAATCCATCGCAACGACGAAATCATCCACAGGTTCATACGCGTTGATTTCAAGTGGAGATTAATCGAACAAGCGATTCCGCCAACGTACGTTAAAACACCTGGTACAAGCGACGAACATCACGTGAAATCGAGTGTTCGTCGCTTCGAGGTAAGGTTTAACAAGAAACACAGAGACATGGCTTTATCCAGGTATTTTCCATTTTTAATGGAAAACGCGGAAGAAATTCAAGAAGAACGGATGACGCTGAAGCTTTTCACTCTCTCGAACGAAAGAGTGTTGAAAAGATTCGGAAATGCGTGGCAATCTGTGGCTCTGGATCATCCTGCTTCATTTGAGACATTAGCGATGGATAATGAATTTAGGAATATGATTCTTGATGACTTGGATATGTTTCGGGCGGGTAAGGAGTTGTATAAGAGGGTTGGTAAACCTTGGAAAAGAGGCTATTTGTTGTATGGTCCACCAGGTTGTGGAAAATCAAGTTTGATTGCTGCTATGGCTAGTTACCTCATTTTTGATGTTTATGATTTGCAATTAAGTGATGTTCAGCAGGATAATGAGCTTAGGAGTTTGTTGATGTCGATTGGGAATCGTTCTATTCTTGTTGTTGAGGATATTGATTGTACCGTTGAGCTTCATAATCGCCGTGCATCTAGAGTCCCTCCTTGGCTTGCTGATAAGCCTCCGGTGACTTTATCAGGATTCCTCAATTTCATTGATGGTTTATGGTCTAGCTGTGGGGAAGCGAGGGTTATCGTGTTCACTACAAATCACATAGACAAGTTGGACCCTGCTATTCTGCGGCCAGGGCGCATGGATGTACACATATCTTTGTCTTACTGCAATCCATCTGTGTTCAGAGAGCTGGCTTCGAACTACCTTGAAATGAAAGAGCACCCACTCTTTGTTGAGGTTGACAAGTTGCTTGAGAAGGCGAAGATCACTCCTGCAGAGGTGGGTGAGCATTTTTTACAGAATGAAGACCCTGAAGTTGCAATAAGAAGCCTGGTTGAGCTCCTTGAAAAGATGGGACGAAATCATTGTGAAAATGAAGTTATCAAAGAAGATGTCACCACTTATTCATTTAAAACCTGCAATGGTTTTGAAACTTAA 1446 0.4461 MRFPSPLTVVSTLAVVSTVSSLATAAALLHSLLHNYLPHELYHYLRSKLSQFTTSLSNELTTIVIDEYDHENLAYNRLFQAAELYLHPDIAQHPKRFKAVLRPKEKNISVVIHRNDEIIHRFIRVDFKWRLIEQAIPPTYVKTPGTSDEHHVKSSVRRFEVRFNKKHRDMALSRYFPFLMENAEEIQEERMTLKLFTLSNERVLKRFGNAWQSVALDHPASFETLAMDNEFRNMILDDLDMFRAGKELYKRVGKPWKRGYLLYGPPGCGKSSLIAAMASYLIFDVYDLQLSDVQQDNELRSLLMSIGNRSILVVEDIDCTVELHNRRASRVPPWLADKPPVTLSGFLNFIDGLWSSCGEARVIVFTTNHIDKLDPAILRPGRMDVHISLSYCNPSVFRELASNYLEMKEHPLFVEVDKLLEKAKITPAEVGEHFLQNEDPEVAIRSLVELLEKMGRNHCENEVIKEDVTTYSFKTCNGFET 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi491g00020 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 438 IPR027417 -
Vivi491g00020 481 Gene3D - 388 454 - -
Vivi491g00020 481 SMART AAA_5 256 393 IPR003593 GO:0016887
Vivi491g00020 481 CDD RecA-like_BCS1 235 387 - -
Vivi491g00020 481 ProSitePatterns AAA-protein family signature. 361 379 IPR003960 GO:0005524|GO:0016887
Vivi491g00020 481 Gene3D - 210 387 IPR027417 -
Vivi491g00020 481 PANTHER BCS1 AAA-TYPE ATPASE 17 455 - -
Vivi491g00020 481 Pfam ATPase family associated with various cellular activities (AAA) 261 390 IPR003959 GO:0005524|GO:0016887
Vivi491g00020 481 Pfam Domain associated at C-terminal with AAA 37 132 IPR025753 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi491g00020 258 390 Calmodulin-binding Proteins AT3G56690 23.404 8.11e-08 53.1