Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi48g00033 ATGGAAAACGATCCATTCCTTCTAATCAACCCTCAAACCTCCCCCTTCACTTCCTCTAAATCCTTCAACGACTTCACCACCTTACAACAACCACCACCACAACCACCACAACAACCACCATCAGAAATCCAATCCTGCAACTTCACTCCCCTCCACCACCACCACCAACAACAACAACCATTCTCTCCTCCCAAACAAAAAAAACTCAGCCGCTGCAAAACCGCACCGGCCATGTTCATTCTCCCGAACCTAAAACCACCCACCACCAACCAACCTCATCTCCCCAAACCTCAAACCAACTCCATCATCCGACAAGGCGTTTGGCTTCTCCTTATCTACCTCTCCATCGGCGTAGCCATCTACTCTTTCAACACCAAAAACTTCTCCGGCATAGAAACTCACCCTATCGTCGACGCACTCTACTTCTGCATAGTCACCATGTGCACAATTGGTTACGGTGACATAGCTCCATTAACACCAACAACCAAAATCTTCGCATGCGTTTTTGTTCTAGTAGGTTTCGGTTTCGTAGACATACTCCTAAGTGGCCTTGTGAATTTCGTTTTAGATTTGCAAGAAAACACGATTTTAACGGGTCTTCAAATGGGTGCTAGGGAGGGTTTTTCAGCTAGGGATTACATTGTGGATGTTGCGAAAGGTAGGATGAGGATTAGGTTGAAGGTAGGTTTGGCACTTGGGGTTGTTGTTCTTTGTATTGGTGTTGGGAGTTTGGTTTTGTGTTTTGTGGAGGGTTTGGATTGGGTTGATTCGGTTTATTTGGCGGTTATGTCTGTTACGACGGTTGGGTATGGGGATCGGGCGTTTAAGACGCTTACCGGGAGGTTGTTTGCGGCGATTTGGTTGTTGTTTTCGACTTTGATGGTTGCTAGGGCTTTTCTGTATTTGGCTGAGGCTAGGATTGATAGGAGACATAGGAGATTGGCTAAGATGGTTTTGCATAGAGAGATTACTATTGAAGATTGGCTTGCTGCTGATATCAACAATACTGGTTTTATTAGTAAGTCAGAATATGTGATCTTCAAGCTGAAAGAGATGGGAAAAATACAAGACAAAGATGTAATGCAAATTTGTGATCAATTCAGGAAGCTGGATCCCTCTAACTGTGGGAAGATAACATTGCCTCATCTCTTAGAGGGAAGAACATGA 1167 0.4456 MENDPFLLINPQTSPFTSSKSFNDFTTLQQPPPQPPQQPPSEIQSCNFTPLHHHHQQQQPFSPPKQKKLSRCKTAPAMFILPNLKPPTTNQPHLPKPQTNSIIRQGVWLLLIYLSIGVAIYSFNTKNFSGIETHPIVDALYFCIVTMCTIGYGDIAPLTPTTKIFACVFVLVGFGFVDILLSGLVNFVLDLQENTILTGLQMGAREGFSARDYIVDVAKGRMRIRLKVGLALGVVVLCIGVGSLVLCFVEGLDWVDSVYLAVMSVTTVGYGDRAFKTLTGRLFAAIWLLFSTLMVARAFLYLAEARIDRRHRRLAKMVLHREITIEDWLAADINNTGFISKSEYVIFKLKEMGKIQDKDVMQICDQFRKLDPSNCGKITLPHLLEGRT 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi48g00033 388 MobiDBLite consensus disorder prediction 1 47 - -
Vivi48g00033 388 SUPERFAMILY Voltage-gated potassium channels 218 326 - -
Vivi48g00033 388 ProSitePatterns EF-hand calcium-binding domain. 332 344 IPR018247 -
Vivi48g00033 388 Pfam Ion channel 235 304 IPR013099 -
Vivi48g00033 388 Pfam Ion channel 109 188 IPR013099 -
Vivi48g00033 388 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 136 362 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vivi48g00033 388 SUPERFAMILY EF-hand 328 383 IPR011992 -
Vivi48g00033 388 MobiDBLite consensus disorder prediction 1 28 - -
Vivi48g00033 388 PRINTS Two pore domain K+ channel signature 266 275 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vivi48g00033 388 PRINTS Two pore domain K+ channel signature 145 173 IPR003280 GO:0005267|GO:0016020|GO:0071805
Vivi48g00033 388 Gene3D - 212 330 - -
Vivi48g00033 388 Gene3D - 93 199 - -
Vivi48g00033 388 SUPERFAMILY Voltage-gated potassium channels 101 188 - -
Vivi48g00033 388 FunFam Two-pore potassium channel 3 211 325 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi48g00033 65 384 Ion Channels AT4G01840 68.598 3.81e-157 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi48g00033 K05389 - gmx:100801488 567.77