Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi48g00021 ATGGAAGGGATTCCAATTGGTAGAAAACTCAATATACTTGCTCATCAAAGTTACCATGAGTTAGTCAACACTCTTGAACACATGTTTGACACCACCATTCTATGGGGGAATGAGATGGATGAAGTGCAACCAGAAAGATGTCATGTGTTAACTTATGAAGATGAAGAAGGAGATTTGGTCATGGTTGGTGATGTTCCTTGGGAGATGTTTTTGTCCACTGTGAAGAGGTTGAAGATCACAAGAGTTAACACATATGGATGTTAG 264 0.3939 MEGIPIGRKLNILAHQSYHELVNTLEHMFDTTILWGNEMDEVQPERCHVLTYEDEEGDLVMVGDVPWEMFLSTVKRLKITRVNTYGC 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi48g00021 87 Gene3D - 1 86 - -
Vivi48g00021 87 ProSiteProfiles PB1 domain profile. 1 84 IPR000270 GO:0005515
Vivi48g00021 87 Pfam AUX/IAA family 1 81 IPR033389 -
Vivi48g00021 87 SUPERFAMILY CAD & PB1 domains 2 80 - -
Vivi48g00021 87 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 1 82 IPR003311 GO:0005634|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi48g00021 1 79 B3 DNA Binding Superfamily AT4G23980 34.177 1.96e-12 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vivi48g00021 AUX_IAA 9.4e-25 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi48g00021 K14484 - gmx:100818376 166.777