Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi48g00020 ATGTTTGATTCTACTTCCTCTTACATTGATTTTCAATCCTCACAAACCAAGAACAACACTCACATGTTCACATACTTACCACCATTCAAAAAACCAAGAGTGGAAACTTCAAACAAGTACTTAGGAGGGTGTGAATATCAAAAAACAGAAAAAGTGAACTTCTCAAACTTTTCTATACCTAAAGTGTTTCTCAAATCAACTCATCAAGGGAAAGAATCAAAAGCCATTGCTTCTACAAAATTCCAACAACAAAAGCCTTTAACACAATTGCTACCAACCATTGATGAACATTCTGAAGTTTCTGATAGCCATAGTACTGCTTTTGGAATTAGAGAGAAGAGAAAAGCTAGTGATATTGAAGGATATGATGAACCATCATCTTCTTCTGCATGTTCACTTGAAGCCTCAAATGATTCAAACTTTGGTTTCGGAAATCATGAGGACAATTATGACTCACCATATTTTAGTGATGATGAAGAAGAAACCTCAGAAAATATGTTGAAAGAGAAGCCAGCTCGTGAAGGAAAAAGAGTCAAGAGAAGCTACAAGAATGCAAAAAGCCATAATTTAACTCAAAGGAAGAGAAGAGACAAAATCAACGAGAAAATTCATACATTGAAAAAGCTCATACCAAATTGCAATAAGATGGACAAGGCTTCAATGCTTGATGATGCCATTGATTATCTTAAAACCCTAAAGCTTCAGTTACAGATTATGACAATGGGTAGAGGAATTTGTATGCCCATTAATCATCTTATGATGTTACCAGCACATCATATGAGTATGAGTATGAATATGAATGCACAACATTTAATGGGGTTTAGGCCAGAAGTCCAGTTTCCTATTCCACAAATGAGTAATGGTGTCACTGACCACAATAATAACAACATCAGAGTTCAGATGTTTGGTTTTTCCAACCAATTACTACCACCACCGATGTCAATTCATAATGCACCTTTCACACTTCCTATCATCGGAAACTCTTCCACTGCAGCAAATTCTTATTGTGACCAGAATCAACCTAGCAAGACATGTGGCTAA 1041 0.3593 MFDSTSSYIDFQSSQTKNNTHMFTYLPPFKKPRVETSNKYLGGCEYQKTEKVNFSNFSIPKVFLKSTHQGKESKAIASTKFQQQKPLTQLLPTIDEHSEVSDSHSTAFGIREKRKASDIEGYDEPSSSSACSLEASNDSNFGFGNHEDNYDSPYFSDDEEETSENMLKEKPAREGKRVKRSYKNAKSHNLTQRKRRDKINEKIHTLKKLIPNCNKMDKASMLDDAIDYLKTLKLQLQIMTMGRGICMPINHLMMLPAHHMSMSMNMNAQHLMGFRPEVQFPIPQMSNGVTDHNNNNIRVQMFGFSNQLLPPPMSIHNAPFTLPIIGNSSTAANSYCDQNQPSKTCG 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi48g00020 346 MobiDBLite consensus disorder prediction 161 178 - -
Vivi48g00020 346 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 184 243 IPR036638 GO:0046983
Vivi48g00020 346 Gene3D - 179 240 IPR036638 GO:0046983
Vivi48g00020 346 MobiDBLite consensus disorder prediction 147 197 - -
Vivi48g00020 346 CDD bHLH_AtPIF_like 183 245 IPR047265 -
Vivi48g00020 346 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 183 232 IPR011598 GO:0046983
Vivi48g00020 346 MobiDBLite consensus disorder prediction 97 121 - -
Vivi48g00020 346 MobiDBLite consensus disorder prediction 93 133 - -
Vivi48g00020 346 SMART finulus 189 238 IPR011598 GO:0046983
Vivi48g00020 346 PANTHER TRANSCRIPTION FACTOR PIF3 82 333 IPR044273 GO:0003700|GO:0006355
Vivi48g00020 346 MobiDBLite consensus disorder prediction 179 193 - -
Vivi48g00020 346 Pfam Helix-loop-helix DNA-binding domain 186 232 IPR011598 GO:0046983
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi48g00020 52 248 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 36.323 8.60e-29 114
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi48g00020 HLH 1.6e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi48g00020 K12126 - gmx:100784724 206.838