Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi48g00018 ATGGGAAGACACTCTTGCTGCTACAAACAGAAGCTCAGGAAAGGTCTATGGTCACCTGAGGAAGATGAAAAACTCTTGAACCATATTACTAACCATGGCCATGGATGTTGGAGCTCAGTTCCTAAGCAAGCAGGTCTTCAAAGATGTGGTAAGAGTTGTAGACTTAGATGGATTAATTACCTAAGACCTGATTTAAAAAGAGGTACATTTTCACAAGATGAAGAAAATCTCATCATTGAACTTCATTCAGTACTAGGAAATAGATGGTCTCAAATTGCTGCGCAGTTACCAGGAAGAACCGACAACGAAATAAAGAATCTATGGAATTCTTGCTTAAAGAAGAAACTGAAGCAAAAAGGTATAGATCCTGTGACTCATAAGCCACTTTCTGAGGTAGAGAATGGAGAAGAAGAAGATGAGAAAACCAGAAGCCAAGAGAAAGTAACAGAAATATCAGAAAGCACTTCAGGTTCTTATGAGAAGAAACAGTCTTCAATTGTTGTAAAAGCCTATGAACCTGAAATGGAAGTTGAAGGTTCTTGTTCAAACTCCAACAACTATTTGATGGGAAATTATCCTATGCAGATGAGTTTCACATCCAATGATAATCTTCCAAACAATGTTTCAAACTCTTCTTCTCACTGGTTCAACCAAACTGGACTAAAACCTTTTGATATGAACTCTGAGTTCACCTCATTTCTACCTAGTTCTTTTTGCTACAAATCATCGGTTCTCGATGTTCCGTCAGAAGATGTTTCGATTTCTTCGGATTCTTTCCATATGAAGAATAGTATGTTACCTTCTTGGGGGTTAACAGATTGTGAGACCTCTATTAAAGAGAATCAAACAGAAGAAGATGAAGCTAAGTGGAATGAGTATCTTCAAAATCCAATGCTAATGCTGCAAAATCAAGCTGCTGAGGGTTTATGCAATCAGAGAAAGGCTGCTCCAACAAATGTGAGCCATGATGATGCTTTAGAGACTATGTTGCCTCATTCAAAGCAAGAGGAATCTTCTCAATCTTATAGTATAGCTTCTTTTGGAGATGTATAG 1053 0.378 MGRHSCCYKQKLRKGLWSPEEDEKLLNHITNHGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQDEENLIIELHSVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLKQKGIDPVTHKPLSEVENGEEEDEKTRSQEKVTEISESTSGSYEKKQSSIVVKAYEPEMEVEGSCSNSNNYLMGNYPMQMSFTSNDNLPNNVSNSSSHWFNQTGLKPFDMNSEFTSFLPSSFCYKSSVLDVPSEDVSISSDSFHMKNSMLPSWGLTDCETSIKENQTEEDEAKWNEYLQNPMLMLQNQAAEGLCNQRKAAPTNVSHDDALETMLPHSKQEESSQSYSIASFGDV 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi48g00018 350 Coils Coil 350 350 - -
Vivi48g00018 350 FunFam MYB transcription factor 68 140 - -
Vivi48g00018 350 MobiDBLite consensus disorder prediction 331 350 - -
Vivi48g00018 350 PANTHER MYB DOMAIN PROTEIN 55 1 295 - -
Vivi48g00018 350 MobiDBLite consensus disorder prediction 122 148 - -
Vivi48g00018 350 Gene3D - 11 67 - -
Vivi48g00018 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vivi48g00018 350 CDD SANT 17 61 IPR001005 -
Vivi48g00018 350 Gene3D - 69 150 - -
Vivi48g00018 350 SMART sant 66 114 IPR001005 -
Vivi48g00018 350 SMART sant 13 63 IPR001005 -
Vivi48g00018 350 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Vivi48g00018 350 MobiDBLite consensus disorder prediction 122 157 - -
Vivi48g00018 350 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Vivi48g00018 350 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vivi48g00018 350 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vivi48g00018 350 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vivi48g00018 350 MobiDBLite consensus disorder prediction 332 350 - -
Vivi48g00018 350 CDD SANT 69 109 IPR001005 -
Vivi48g00018 350 FunFam Myb transcription factor 11 67 - -
Vivi48g00018 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi48g00018 1 147 MYB Transcription Factor Family AT4G01680 86.395 2.27e-92 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vivi48g00018 Myb_DNA-binding 3.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi48g00018 K09422 - gmx:100782199 406.371