Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi48g00009 ATGGCGTCTTCATTCTCAACTCAATTTCTTCAATCTCACAACACACTTTCTCATCTTCAGGGTAATTTTAGCCAAGACGTGTCTCTGGTTCAAAGGTCACAAACCGTATCAAGGATTGGTTACAACACATCATTGCCATCAAAATCACATTTTCCTTTGAAGTTTTCAACCACACAACAAGCTGGAGCAACTTCAATTAGATATAGAAAAGTCACATGTGCTGCTGCCGCTGAAAATGTTCAAGAGCTGCAAGCCAAAGTGACAACCAAATGCTTCTTTGATGTAGATATTGGGGGTAAAGCTGTGGGCAGAATTGTTTTGGGCTTGTTCGGAGAGGTTGCTCCGAAAACAGTTGAAAATTTCCGCGCTTTGTGCACAGGAGAGAAAGGATATGGTTACCAAGGATGCTCCTTCCATCGCGTAATCAAAGAATTCATGATTCAGGGAGGGGACTTCACTGAAGGAAATGGAACCGGTGGAAAAAGTATCTACGGTTCGAGTTTTGAAGATGAGAATTTTGCTTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCCAATGCCGGCCCTAATACCAACGGCAGTCAATTTTTTATTTGCACCGTAAAGACTCCATGGTTAGATGATCGACATGTTGTGTTTGGACATGTCATTGAAGGAATGGATGTTGTGAGGATACTTGAGTCTCAGGAAACAAGCAGGTTAGATATCCCTACAAAGCCTTCCAGAATTGTTAAATGCGGAGAATTGCCTCTAGATGGTTGA 765 0.4235 MASSFSTQFLQSHNTLSHLQGNFSQDVSLVQRSQTVSRIGYNTSLPSKSHFPLKFSTTQQAGATSIRYRKVTCAAAAENVQELQAKVTTKCFFDVDIGGKAVGRIVLGLFGEVAPKTVENFRALCTGEKGYGYQGCSFHRVIKEFMIQGGDFTEGNGTGGKSIYGSSFEDENFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDDRHVVFGHVIEGMDVVRILESQETSRLDIPTKPSRIVKCGELPLDG 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi48g00009 254 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 95 248 IPR002130 GO:0000413|GO:0003755
Vivi48g00009 254 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 133 150 IPR020892 GO:0003755|GO:0006457
Vivi48g00009 254 SUPERFAMILY Cyclophilin-like 86 250 IPR029000 -
Vivi48g00009 254 CDD cyclophilin_ABH_like 90 248 - -
Vivi48g00009 254 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 90 250 - -
Vivi48g00009 254 Gene3D - 74 253 IPR029000 -
Vivi48g00009 254 FunFam Peptidyl-prolyl cis-trans isomerase 76 254 - -
Vivi48g00009 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 181 196 IPR002130 GO:0000413|GO:0003755
Vivi48g00009 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 196 208 IPR002130 GO:0000413|GO:0003755
Vivi48g00009 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 138 150 IPR002130 GO:0000413|GO:0003755
Vivi48g00009 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 124 IPR002130 GO:0000413|GO:0003755
Vivi48g00009 254 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 209 224 IPR002130 GO:0000413|GO:0003755
Vivi48g00009 254 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 92 249 IPR002130 GO:0000413|GO:0003755
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi48g00009 103 247 U-box Gene Family AT5G67530 45.205 3.30e-32 122
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi48g00009 K03768 - gmx:100785805 389.808