Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi48g00007 ATGTGGTTAATCTTAAACAATTATTTTTTTTTAGGTGGTGCATGTGGTTATGGAAATCTGAACATAGATGGATATGGAATAAAAACAGCTGCATTGAGTACTGCTTTGTTTAATGATGGCAAATCATGTGGTGGCTGCTATCTGATAGTTTGTGATGCAAGAAAAGTCCCTCAATGGTGTCTCAGAGGCACTTCCATTACTATTACTGCCACAAACTTTTGTCCACCTAACTTTGCACAACCTAATGACAATGGTGGTTGGTGTAATCCCCCAAGACCACACTTTGACATGTCTCAACCTGCCTTTGAAACTATAGCCAAATATAGAGCTGGAATTGTTCCCATTCTATATAGAAGAGTTGGTTGCAGAAGAAGTGGGAACATAAGATTTACTATAAATGGGAGAGACTATTTTGAGCTGGTGCTTATAAGCAACATAGGTGGAGGTGGAGAGATATCAAAAGTTTGGATAAAAGGATCAAAAAAGAACAAATGGGAATCAATGTCAATGAATTGGGGTGCTAATTGGCAGAGTCTAAGTTATCTGAATGGTCAGAGTTTATCATTTAGAGTTCAACTCAAGAATGGAAAGACTCTTACAGCTATAAACGTTGCACCTTCCAATTGGAGATTTGGCCAGTCTTTCAAAAGTAATGTTCAGTTTTGA 666 0.3769 MWLILNNYFFLGGACGYGNLNIDGYGIKTAALSTALFNDGKSCGGCYLIVCDARKVPQWCLRGTSITITATNFCPPNFAQPNDNGGWCNPPRPHFDMSQPAFETIAKYRAGIVPILYRRVGCRRSGNIRFTINGRDYFELVLISNIGGGGEISKVWIKGSKKNKWESMSMNWGANWQSLSYLNGQSLSFRVQLKNGKTLTAINVAPSNWRFGQSFKSNVQF 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi48g00007 221 SMART dpbb_1 29 117 IPR007112 -
Vivi48g00007 221 Gene3D - 6 123 IPR036908 -
Vivi48g00007 221 PANTHER EXPANSIN-A15 11 218 IPR002963 GO:0009664
Vivi48g00007 221 PRINTS Expansin/Lol pI family signature 11 29 IPR007118 GO:0005576
Vivi48g00007 221 PRINTS Expansin/Lol pI family signature 33 51 IPR007118 GO:0005576
Vivi48g00007 221 PRINTS Expansin/Lol pI family signature 110 126 IPR007118 GO:0005576
Vivi48g00007 221 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Vivi48g00007 221 PRINTS Expansin/Lol pI family signature 165 179 IPR007118 GO:0005576
Vivi48g00007 221 CDD DPBB_EXPA_N 11 122 - -
Vivi48g00007 221 Pfam Lytic transglycolase 29 117 IPR009009 -
Vivi48g00007 221 Pfam Expansin C-terminal domain 128 206 IPR007117 -
Vivi48g00007 221 Gene3D - 125 221 IPR036749 -
Vivi48g00007 221 SUPERFAMILY Barwin-like endoglucanases 11 145 IPR036908 -
Vivi48g00007 221 PRINTS Expansin signature 66 76 IPR002963 GO:0009664
Vivi48g00007 221 PRINTS Expansin signature 138 159 IPR002963 GO:0009664
Vivi48g00007 221 PRINTS Expansin signature 24 38 IPR002963 GO:0009664
Vivi48g00007 221 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Vivi48g00007 221 PRINTS Expansin signature 53 64 IPR002963 GO:0009664
Vivi48g00007 221 PRINTS Expansin signature 126 138 IPR002963 GO:0009664
Vivi48g00007 221 PRINTS Expansin signature 102 115 IPR002963 GO:0009664
Vivi48g00007 221 PRINTS Expansin signature 85 102 IPR002963 GO:0009664
Vivi48g00007 221 PRINTS Expansin signature 203 219 IPR002963 GO:0009664
Vivi48g00007 221 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 137 217 IPR007117 -
Vivi48g00007 221 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 12 127 IPR007112 -
Vivi48g00007 221 SUPERFAMILY PHL pollen allergen 124 217 IPR036749 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi48g00007 11 221 Expansin Gene Family AT4G01630 81.517 7.84e-132 369
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi48g00007 - - psat:127132523 434.876