Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi48g00004 ATGGTTTTGCTCCTTATGTTCAAGTTGGGTATTATATTTGTAGTATCTGCTGTTTGGCAACAAGCTCATGCAACTTTTTATGGTGGAAGTGATGCCTCGGGAACAATGGGAGGTGCATGTGGGTATGGAAATCTGAACATTGATGGATATGGAATAAAAACAGCTGCATTGAGTACTGCTTTGTTTAATGATGGAAAATCATGTGGTGGCTGCTATCAGATTGTTTGTGATGCAAGAAAAGCTCCTCAATGGTGTCTCAAAGGCACTTTCATTACTATTACTGCCACAAACTTTTGTCCACCTAACTTTGCACTCCCTAATGACAATGGTGGTTGGTGTAATCCCCCAAGACCACATTTTGATATGTCTCAACCTGCCTTTCAGACCATAGCCAAGTACAGAGCTGGAATTGTTCCCATTTTTTATAGAAGAGTTGGGTGCAGAAGAAGTGGAAACATAAGATTTACTATAAATGGGAGAGATTATTTTGAGCTTGTGCTTATAAGCAACGTAGGTGGAGGTGGAGAGATATCAAAAGTTTGGATAAAAGGGTCAAAAAAGAATCAATGGGAATCAATGTCAATGAATTGGGGTGCCAATTGGCAGAGTCTAAGTTATCTGAATGGTCAGAGTTTATCATTTAGAGTTCAACTCACGAATGGAAGGACTCGTACAGCGATAAATGTTGCACCATCCAATTGGAGATTTGGCCAGTCTTTCAAAAGTAATGTTCAGTTTTGA 741 0.3954 MVLLLMFKLGIIFVVSAVWQQAHATFYGGSDASGTMGGACGYGNLNIDGYGIKTAALSTALFNDGKSCGGCYQIVCDARKAPQWCLKGTFITITATNFCPPNFALPNDNGGWCNPPRPHFDMSQPAFQTIAKYRAGIVPIFYRRVGCRRSGNIRFTINGRDYFELVLISNVGGGGEISKVWIKGSKKNQWESMSMNWGANWQSLSYLNGQSLSFRVQLTNGRTRTAINVAPSNWRFGQSFKSNVQF 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi48g00004 246 SUPERFAMILY Barwin-like endoglucanases 10 170 IPR036908 -
Vivi48g00004 246 SMART dpbb_1 54 142 IPR007112 -
Vivi48g00004 246 CDD DPBB_EXPA_N 19 147 - -
Vivi48g00004 246 Gene3D - 14 148 IPR036908 -
Vivi48g00004 246 PRINTS Expansin/Lol pI family signature 190 204 IPR007118 GO:0005576
Vivi48g00004 246 PRINTS Expansin/Lol pI family signature 58 76 IPR007118 GO:0005576
Vivi48g00004 246 PRINTS Expansin/Lol pI family signature 135 151 IPR007118 GO:0005576
Vivi48g00004 246 PRINTS Expansin/Lol pI family signature 18 33 IPR007118 GO:0005576
Vivi48g00004 246 PRINTS Expansin/Lol pI family signature 36 54 IPR007118 GO:0005576
Vivi48g00004 246 PRINTS Expansin/Lol pI family signature 228 242 IPR007118 GO:0005576
Vivi48g00004 246 PRINTS Expansin signature 49 63 IPR002963 GO:0009664
Vivi48g00004 246 PRINTS Expansin signature 228 244 IPR002963 GO:0009664
Vivi48g00004 246 PRINTS Expansin signature 163 184 IPR002963 GO:0009664
Vivi48g00004 246 PRINTS Expansin signature 78 89 IPR002963 GO:0009664
Vivi48g00004 246 PRINTS Expansin signature 110 127 IPR002963 GO:0009664
Vivi48g00004 246 PRINTS Expansin signature 151 163 IPR002963 GO:0009664
Vivi48g00004 246 PRINTS Expansin signature 91 101 IPR002963 GO:0009664
Vivi48g00004 246 PRINTS Expansin signature 127 140 IPR002963 GO:0009664
Vivi48g00004 246 PRINTS Expansin signature 199 220 IPR002963 GO:0009664
Vivi48g00004 246 Pfam Expansin C-terminal domain 153 231 IPR007117 -
Vivi48g00004 246 SUPERFAMILY PHL pollen allergen 149 242 IPR036749 -
Vivi48g00004 246 FunFam Expansin 11 148 - -
Vivi48g00004 246 Gene3D - 150 246 IPR036749 -
Vivi48g00004 246 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 37 152 IPR007112 -
Vivi48g00004 246 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 162 242 IPR007117 -
Vivi48g00004 246 PANTHER EXPANSIN-A15 16 243 IPR002963 GO:0009664
Vivi48g00004 246 FunFam Expansin 152 246 - -
Vivi48g00004 246 Pfam Lytic transglycolase 54 142 IPR009009 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi48g00004 1 246 Expansin Gene Family AT4G01630 78.862 4.22e-146 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi48g00004 - - psat:127132523 478.789