Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi487g00003 ATGAATTTTGATACCAAGTCACTCGTATCTGCAATGGCAAAGTTTGATACCAAGCCATTTGTATCTGCAATGGCTTCAATTGTGTTAATGCGAACCATCACGAATGAAATCATTCCTCATGAGCTTCTTCACTTTTTTCAATCCGGACTTCATCATCTTACTCGGCATTTTGCCGCGCAATTCACGATAGTCATTGAAGAGTTTCAAGGAATGGCAAGAAACCAAGTGTTTGATGCTGCACAAGCCTACCTTGGAACAAAAGCAACTGTCAAAGCTGAAAGAGTAAAAGTCAGCAAATCTGATGATCGTAAAGATCTTTCATTCAATCTTGATAGGAATGAAGAAGTGAGTGATGTTTATGAAGGTGTTAGTGTAAAGTGGAAACTAGTTTGCATACAAGTTGATTCTTCTCGAATTCAACATTCGGATCACGAGTCATCGTCCGTGTCAGAAATAAGATCCTATGAACTAACTTTTCACAAGAAACACAAGAACAAGATCTTTGATTCGTATTTGCCTTACGTAATGGAGGTAGCTCAACAGATTAAACAAGGAGACATGGCGATAAAGATTCACTCGAATGAATCTTATCGCTGGTGTCATGAACCTGTTAAGTTCAACCATCCAATGAGTTTCGATACTCTTGCAATCGATGAAAAGCTTCGAAGCGAAATTGTGAAGGATTTGGACAAATTTGTGAAGGCTAGAGAGTTTTATAGAAGAACTGGGAAGGCTTGGAAACGCGGTTACTTGTTGTATGGTCCTCCTGGTACCGGAAAGTCTAGTTTGATTGCAGCCATGGCTAACTATCTCAACTATGATATATATGACTTGGATCTCACTTCTATAAGAGATAATAAGTACTTGAAGGAACTAGTTCTTAGCATGTCTAATCGTTCTATACTCGTGATTGAGGATATCGATTGCACTATAAATTTGCAGAACCGAGAACAAGATAAAGAAGTGGTTAATAACGGATACAATTTGGTGACACTTTCGGGACTACTGAATGCTGTAGATGGTCTTTGGTCATGCTGTTCAGAGGAACACATAATTGTTTTCACAACAAATCACAAAGAAAGACTTGATCCTGCTTTGTTAAGGCCGGGTAGAATGGACAAGCAAATTCACTTGTCATATTGCAACTTTTTTGCTTTTAAGCAATTGGCAGTGAACTATCTTTGCATTACTGAACATGAACTATACGAAAAGATTGAAGAACTTTTAGGACAAGTGAAAGTTACTCCAGCTGAAATTGGAGAAGTGCTAACAAAGGATGCTGATGCTACAGAATGCTTACAAGACCTTATCAGTTTCCTTCAAGACAAGAAAATGATCAAGGAAGAGACTAATATGAAAGAAGAAAATGTTGTAATATAA 1380 0.3775 MNFDTKSLVSAMAKFDTKPFVSAMASIVLMRTITNEIIPHELLHFFQSGLHHLTRHFAAQFTIVIEEFQGMARNQVFDAAQAYLGTKATVKAERVKVSKSDDRKDLSFNLDRNEEVSDVYEGVSVKWKLVCIQVDSSRIQHSDHESSSVSEIRSYELTFHKKHKNKIFDSYLPYVMEVAQQIKQGDMAIKIHSNESYRWCHEPVKFNHPMSFDTLAIDEKLRSEIVKDLDKFVKAREFYRRTGKAWKRGYLLYGPPGTGKSSLIAAMANYLNYDIYDLDLTSIRDNKYLKELVLSMSNRSILVIEDIDCTINLQNREQDKEVVNNGYNLVTLSGLLNAVDGLWSCCSEEHIIVFTTNHKERLDPALLRPGRMDKQIHLSYCNFFAFKQLAVNYLCITEHELYEKIEELLGQVKVTPAEIGEVLTKDADATECLQDLISFLQDKKMIKEETNMKEENVVI 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi487g00003 459 SMART AAA_5 246 382 IPR003593 GO:0016887
Vivi487g00003 459 Gene3D - 201 376 IPR027417 -
Vivi487g00003 459 PANTHER BCS1 AAA-TYPE ATPASE 21 448 - -
Vivi487g00003 459 Gene3D - 377 445 - -
Vivi487g00003 459 Pfam ATPase family associated with various cellular activities (AAA) 251 379 IPR003959 GO:0005524|GO:0016887
Vivi487g00003 459 CDD RecA-like_BCS1 225 378 - -
Vivi487g00003 459 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 106 424 IPR027417 -
Vivi487g00003 459 Pfam Domain associated at C-terminal with AAA 38 131 IPR025753 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi487g00003 234 382 Calmodulin-binding Proteins AT3G56690 26.752 2.15e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi487g00003 K08900 - gmx:100778503 559.681