Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi486g00028 ATGGCCCTAAATAAGACGGGAAACGAGCATGGGTTGTTTCCTCAATACAACCAACAAGAATCGCGTAGTGGTGTTGCAAATGTACATAATAGTAATAATAAAAGTATCCCTAAAGAGGTTGGAAGAGTTTTTGTTTCACCTGATGTATCGCAAAATCGTGAGAGTAGGTTTGGATTGAATAGGGAGAATGGCCATGTGAGGTACGAAGATCTTACAAATATTTTAGGGTTGAAGAGAATGGACTCGGAGAGTTTTTCTGATGTAGGTGAGTTTATCCCTAAAAAACAGCCGATGGACAACGGCCTTTCTGTAAATGTTTTAAGCAAAGGTCAAAAGGGAGACAACAACCATGGTGGCCGTGGTGCGTTGAGGAAGACATATAGTGAGTCAATTAGTGAGCAAATCGGTACTAAGCTGGCTGTGTTATCGCCTGTTTACTTACATAAAAGATCTCACTCAAATGGGTTTTCCGGTTCTGGGATTTTAGAAGATTCTTTGTCTGGTGGGAAAATGAAGTTTCTTTGCAGCTTCGGCGGAAAAATATTACCGAGGCCCGGTGATGGTAAACTCAGATACGTTGGTGGAGAAACTCACATTATATCTATCCAAAAGGATATTCCGTGGGAAGAGCTTATGAACAAGACTTTGCGTATTTGCAGTCAACCTCACACAATCAAATACCAACTTCCAGGGGAAGATCTTGATGCTCTAATATCGGTTTCCTCCGATGAGGATCTTCAAAACATGATAGAGGAATATCATGAACTTGAAAGTCACGAAGGTTCTCAGAAACTTCGAATTTTTTTAGTTCCTTTGAGTGAATCTGAAGAGACAACATCAACCGATGCAAACACCGTTCTGCAGAATGACCCTGATTACCAATACGTTGTTGCTTTAAACGGCATAATAGACCATAGCCCTAAGAAAAACATCGGTGGACAAAGTTTGACAAACGAAACAAATTATTCAGGGAATAGTTTCAGTTTTGCCCCAACAATCGCCTCTTCTCCTAAGGAGATCAGGGATGGTAATAAAGGTATGAGTGGTTTAAATCCAGATAGAATTTTGAATGATTCCGTAAATCTTCAAAGTCCATTGCGAATTTCTCCTACTCCGGTTCAAGCTGCAGGTTCTAGTACAGGTTACATACAATTGCTTGGCGGCAACTCATGCCAGGGAAGTATTGACAGCAATGCATCATTTGTTACTGCTCAGATGCATTCTGGAAACTCGAGCATCAATGCTGCTGATTGCCGACACCCTCAACAAGCTGTTCCTCGTCAACATGGTGACATTGGTCCGCCCAAAAATCTCAATGAACAGTATTTTGATAACTGCAATGCAAATAATGGTTACAGCGTTGATGTTTTTGGTGGAACCTTGCTCAATGATAAAATGTTCTCAAGAAATCCGATCACTCAACAGACCGAATCTTATGGAATTAATAACGTTCTGCCTCATGGGATGCCTCATGCTTTTTCTGATTCACAGTTGCATCCAAGTGGATCAAAGTCTATTTACTGCTCTCAAGAAGGAATTACCCCGTCTTTCTCGTTGAACCTTGAAAAGGCTGAATTATCTTCGACAGTGGGTGTCTCACAAGTGAACCTTATCAAGGGTCAACACGATCCCTTCCTCCATCATCCTCAAATACAAAGTAAGATGCCAAATGTGGAGTCAGCTGAGATACATAGACGGCAAGGTGTGGCATCATCATCTCCCTACTCGGAATCCGTTGGAACGAATGATCGCATTAATAAGAACAGCATTTTAACTGAAAAAAAGTACCTTGTTGCTCAAACCAACTTAAGTGGATCCAACTTTGTAGAAAACGACGTGCAGGAAAATCCTTTGAAGTTAGAAAGGATTGTGATAAATGAAGATAAGTATCCTATTTCTAAGAAGGATAACAACGTTTACGAGGGAAATTCAACTGTCAACTACATGAGTGAATTGCAGCTCTTGGATACATTCCCGACTAATAACATAAGTTCTCAGATTGGTACGCAATATAATTGGGATCAACCTCATGAGGACACGCTTCCTTTGTCATCAGGCATGACGGGACTCTCACTAACTAACCTTGTCGACAAGACTCCGTCTGATCTTCTTGACATTGGCCAAAAGACAAGTTATGGCAGAAATATCAATTTAAATTCTCCAATCTCAGAATATGCAGAAAACTCTCGTGACAAAAGTTCTGTCAGAGATGATATGTTCAATTTCTCCTTCGATCCACATTCTCTTAAATCTGCACAAATTCAGCCTTCTCAGAATCAGAACACAACAGGTTTTCATGATAATCCAACAATAAACTCTGAAAGTTTGAGTCCTGCTGTACTTCATGATGATGTCTGTCCAAGTTTGATCTTGCCGGTTGATGGCCTGGATAATTCAAGAAAGAATATTTCTTTTAAAAAGGAACCTTCATTTCTCAATGACTTCATTACAAGCACCGATCAAATGGTTGATCAGTTTAATCACGAACATTCTACCTCTGGATTGTCAAAAGTTGAAGGTGAAATTTTAGGACAATTGAAAAAATCAGAAAGGTCTAATGATGCCAAACTAGTGGAGTCATTTGCTGTAGCAAAAGATGCGACTGGTGTTGTTCCTTCAAATCGCAAGTCTTCACCAGTGCACACCCCACATAATTATGATGAAGTTGGAAGTGATGTATCTCCATCTCCAACAGAAGTAGAGAGCACCATCCCAGAGTCTGATCCCGAGGATTATAAAGACGATCAAGCCGACGTGAATGACTTTCTTTCTGATGCAATGATAGCAGAAATGGAGGCCAGCATATACGGTTTGCAGATAATCAGGAACACTGATCTTGAAGAACTTATGGAGTTAGGATCTGGTACCTATGGAACTGTTTATCATGGAAAATGGCGAGGAACAGATGTTGCAATCAAGAGAATCAAAAAGAGCTGCTTTGGAGGGAGAACTTCTGAGCAAGAACGGTTGGCAAAAGATTTCTGGAGAGAGGCGCAGATCCTGTCAAATCTTCATCATCCCAATGTTCTCGCATTTTATGGAATCGTACCCGACGGAGCTTGTGGGACCTTAGCAACTGTAACAGAATATATGGTTAATGGTTCCCTTAGACATGTTCTTGTCAAGAACAACAGATTACTAGATCGTCGTAAAAAGCTTATAATTGCCATGGATGCAGCTTTCGGTATGGAATATTTGCACTCAAAGAATATTGTCCATTTTGATTTGAAGTGTGACAATTTGCTTGTTAATCTAAGGGATTCACAACGACCCATATGCAAGGTTGGAGATTTTGGATTGTCAAGAATTAAACGAAATACCCTTGTATCTGGGGGTGTGCGAGGAACCCTTCCATGGATGGCACCAGAGTTGTTGAATGGTAATAGCAGCCGGGTTTCGGAAAAGGTTGACGTTTTCTCATTTGGCATCTCAATGTGGGAATTATTGACAGGAGAGGAACCTTATGCAGATATGCATTGTGGTGCCATTATTGGGGGCATTGTAAAGAACACACTTCGACCGCCGATTCCAGACCGATGTGATCCTGAATGGAGAAAGCTAATGGAAGAGTGTTGGTCACGTGACCCTGAATATCGTCCATCGTTCACCGAGATAACAAACAGGTTAAGATCCATGTCTATGGCCCTTCAAGGAAAGGGGGTTGAAGAGAAGGCATGGCAATTGAGAGCTACTAAAGTTCCATAG 3705 0.41 MALNKTGNEHGLFPQYNQQESRSGVANVHNSNNKSIPKEVGRVFVSPDVSQNRESRFGLNRENGHVRYEDLTNILGLKRMDSESFSDVGEFIPKKQPMDNGLSVNVLSKGQKGDNNHGGRGALRKTYSESISEQIGTKLAVLSPVYLHKRSHSNGFSGSGILEDSLSGGKMKFLCSFGGKILPRPGDGKLRYVGGETHIISIQKDIPWEELMNKTLRICSQPHTIKYQLPGEDLDALISVSSDEDLQNMIEEYHELESHEGSQKLRIFLVPLSESEETTSTDANTVLQNDPDYQYVVALNGIIDHSPKKNIGGQSLTNETNYSGNSFSFAPTIASSPKEIRDGNKGMSGLNPDRILNDSVNLQSPLRISPTPVQAAGSSTGYIQLLGGNSCQGSIDSNASFVTAQMHSGNSSINAADCRHPQQAVPRQHGDIGPPKNLNEQYFDNCNANNGYSVDVFGGTLLNDKMFSRNPITQQTESYGINNVLPHGMPHAFSDSQLHPSGSKSIYCSQEGITPSFSLNLEKAELSSTVGVSQVNLIKGQHDPFLHHPQIQSKMPNVESAEIHRRQGVASSSPYSESVGTNDRINKNSILTEKKYLVAQTNLSGSNFVENDVQENPLKLERIVINEDKYPISKKDNNVYEGNSTVNYMSELQLLDTFPTNNISSQIGTQYNWDQPHEDTLPLSSGMTGLSLTNLVDKTPSDLLDIGQKTSYGRNINLNSPISEYAENSRDKSSVRDDMFNFSFDPHSLKSAQIQPSQNQNTTGFHDNPTINSESLSPAVLHDDVCPSLILPVDGLDNSRKNISFKKEPSFLNDFITSTDQMVDQFNHEHSTSGLSKVEGEILGQLKKSERSNDAKLVESFAVAKDATGVVPSNRKSSPVHTPHNYDEVGSDVSPSPTEVESTIPESDPEDYKDDQADVNDFLSDAMIAEMEASIYGLQIIRNTDLEELMELGSGTYGTVYHGKWRGTDVAIKRIKKSCFGGRTSEQERLAKDFWREAQILSNLHHPNVLAFYGIVPDGACGTLATVTEYMVNGSLRHVLVKNNRLLDRRKKLIIAMDAAFGMEYLHSKNIVHFDLKCDNLLVNLRDSQRPICKVGDFGLSRIKRNTLVSGGVRGTLPWMAPELLNGNSSRVSEKVDVFSFGISMWELLTGEEPYADMHCGAIIGGIVKNTLRPPIPDRCDPEWRKLMEECWSRDPEYRPSFTEITNRLRSMSMALQGKGVEEKAWQLRATKVP 1234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi486g00028 1234 ProSiteProfiles Protein kinase domain profile. 946 1216 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi486g00028 1234 PRINTS Tyrosine kinase catalytic domain signature 1065 1083 IPR001245 GO:0004672|GO:0006468
Vivi486g00028 1234 PRINTS Tyrosine kinase catalytic domain signature 1028 1041 IPR001245 GO:0004672|GO:0006468
Vivi486g00028 1234 PRINTS Tyrosine kinase catalytic domain signature 1136 1158 IPR001245 GO:0004672|GO:0006468
Vivi486g00028 1234 PRINTS Tyrosine kinase catalytic domain signature 1180 1202 IPR001245 GO:0004672|GO:0006468
Vivi486g00028 1234 ProSitePatterns Protein kinases ATP-binding region signature. 952 977 IPR017441 GO:0005524
Vivi486g00028 1234 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 939 1033 - -
Vivi486g00028 1234 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 190 272 - -
Vivi486g00028 1234 Pfam PB1 domain 187 271 IPR000270 GO:0005515
Vivi486g00028 1234 Gene3D - 189 271 - -
Vivi486g00028 1234 Gene3D Phosphorylase Kinase; domain 1 939 1033 - -
Vivi486g00028 1234 SUPERFAMILY CAD & PB1 domains 187 275 - -
Vivi486g00028 1234 SMART PB1_new 185 272 IPR000270 GO:0005515
Vivi486g00028 1234 PANTHER SERINE-THREONINE PROTEIN KINASE 223 1212 - -
Vivi486g00028 1234 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1071 1083 IPR008271 GO:0004672|GO:0006468
Vivi486g00028 1234 MobiDBLite consensus disorder prediction 1 34 - -
Vivi486g00028 1234 SMART serkin_6 946 1215 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi486g00028 1234 Pfam Protein tyrosine and serine/threonine kinase 949 1209 IPR001245 GO:0004672|GO:0006468
Vivi486g00028 1234 CDD PB1_UP2 174 269 - -
Vivi486g00028 1234 SUPERFAMILY Protein kinase-like (PK-like) 934 1208 IPR011009 -
Vivi486g00028 1234 Gene3D Transferase(Phosphotransferase) domain 1 1034 1232 - -
Vivi486g00028 1234 MobiDBLite consensus disorder prediction 10 34 - -
Vivi486g00028 1234 CDD STKc_MAP3K-like 952 1209 - -
Vivi486g00028 1234 MobiDBLite consensus disorder prediction 889 903 - -
Vivi486g00028 1234 MobiDBLite consensus disorder prediction 870 914 - -
Vivi486g00028 1234 FunFam Octicosapeptide/phox/Bem1p domain kinase superfamily protein 1034 1225 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi486g00028 169 302 MAP Kinase Kinase Kinase AT1G16270 61.481 2.00e-42 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-6 Vivi486g00028 PK_Tyr_Ser-Thr 7.2e-62 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi486g00028 - - aprc:113862751 1478