Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi486g00014 ATGGAGAAACAAGATCCATCTCAACCTACAAATCAAGGTAATGAAAAGAAAAAACATTATAGAGGAGTTAGGCTGAGACCATGGGGAAAATGGGCAGCTGAAATAAGAGATCCTAAAAAAGGAGCAAGAGTATGGCTTGGCACATTTGAAACAGCTGAAGCTGCAGCTACTGCTTATGATGAAGCTGCATTGAAGTTCAAAGGAAACAAAGCCAAGCTTAATTTCCCTCAACGAATTTCTCATTCGCCGAATTCGGATCCATCGCCAAAGCGTAATAACAATAATATTCCATTTATATCTTCATCTTCATCTTCATCATCGAAGAGTACTCCATCAAAATCTCTTTTTCCGTTATCATCAACAGAAAAAGAGATGTTTCCAAACCTAATGCAATATGCGCAAGTGCTTTGTAGTAAGGACGATGAAGATCTTCGACGTGCTACTACATGTCTTTACAATAATAGTAGTAATAATAATAGTAATCGTCACAATAATAATAATAATAATGAACGATTTCGCTATTATAATTTGCCACCATTCTTCTCAACAATGGCGCCATCTTCTACTTCTAAGGATGATGTTATGTCTAGGGTTGGAGATCATCGCCCTTTAGATATGAGAAATGATCTTGATGAAAGGAACATCAATGAGTCATAA 657 0.3653 MEKQDPSQPTNQGNEKKKHYRGVRLRPWGKWAAEIRDPKKGARVWLGTFETAEAAATAYDEAALKFKGNKAKLNFPQRISHSPNSDPSPKRNNNNIPFISSSSSSSSKSTPSKSLFPLSSTEKEMFPNLMQYAQVLCSKDDEDLRRATTCLYNNSSNNNSNRHNNNNNNERFRYYNLPPFFSTMAPSSTSKDDVMSRVGDHRPLDMRNDLDERNINES 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi486g00014 218 CDD AP2 18 76 IPR001471 GO:0003700|GO:0006355
Vivi486g00014 218 MobiDBLite consensus disorder prediction 185 218 - -
Vivi486g00014 218 FunFam Ethylene-responsive transcription factor 2 18 77 - -
Vivi486g00014 218 SMART rav1_2 19 82 IPR001471 GO:0003700|GO:0006355
Vivi486g00014 218 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Vivi486g00014 218 PRINTS Ethylene responsive element binding protein signature 20 31 IPR001471 GO:0003700|GO:0006355
Vivi486g00014 218 ProSiteProfiles AP2/ERF domain profile. 19 76 IPR001471 GO:0003700|GO:0006355
Vivi486g00014 218 Gene3D AP2/ERF domain 18 78 IPR036955 GO:0003700|GO:0006355
Vivi486g00014 218 MobiDBLite consensus disorder prediction 194 218 - -
Vivi486g00014 218 Pfam AP2 domain 19 68 IPR001471 GO:0003700|GO:0006355
Vivi486g00014 218 SUPERFAMILY DNA-binding domain 19 77 IPR016177 GO:0003677
Vivi486g00014 218 PANTHER DNA-BINDING DOMAIN 10 142 IPR044808 GO:0003700|GO:0009873
Vivi486g00014 218 MobiDBLite consensus disorder prediction 75 116 - -
Vivi486g00014 218 MobiDBLite consensus disorder prediction 1 23 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi486g00014 1 152 AP2-EREBP Transcription Factor Family AT5G13330 46.497 4.94e-40 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi486g00014 AP2 8.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi486g00014 - - tpra:123908943 263.462