Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi485g00056 ATGGCTCTCAACAACAATCGCTACCTTCAACCTAATCAATTCGATATTCAGCAAATTTTGTCAGAAGCGCAATATAGATGGTTGCGTCCAGCTGAAATTTGTCAAATTCTTACTAATCATAATCACTTTCAGATTACTTCAGAGCCTGCAAATATGCCTCCAAGTGGTTCACTTTTTCTATTTGATCGGAAGGTGATGAGATACTTCAGAAAAGATGGACATAACTGGAGGAAGAAAAAAGATGGAAAAACTGTTAGGGAAGCTCATGAGAGACTCAAGGCTGGAAGTGTGGAGGTATTGCACTGCTACTATGCTCATGGAGAACAAAATCAAAATTTTCAAAGACGAACTTACTGGATGCTTGAGGATGAACTCTCGCACATTGTTCTAGTCCATTATCGGGAAGTCAAGGGAAACAAGGAAACTTTAATATGTTCCAAAGAAAATGAAGAATCCAATCCTCATTATGCTCAACAAACATACAAGGCTATGCCCAACACAGAGATGGAGACTTCTTTACCGTCTAGCATGAATAGTGCTCAACCATCAGATTACGAAGAAGCTGAATCAGCATTCAATAGCCATGCAAATTCCGATTTCCACTCTTTTCTTGAGATGCAACACCCTGTTGTTCAGAAGATTAAAGCTCAACAACTCGCTGATTTTAACTGTCCTCTACCACTCAAAGATGGTCTAGAAAGGTTGCCTGTCATTAATAATGTTGGATTGACATGTGAACCCTCAAAACTCCTTGGATTTTCATCATGGCAAGATATCTTAGAAAATAATGCCGGAAGTCATAATGTGCCTTTTCAGCATTTTTTTCCTGAAACACAATTCAATGACATGGGAATAAATAGTACTTCTCAAGGATATGAAGTAATGGGGCAACATCTAAGCATCGGCATTACTAATCACCATGAGAATGGAAGTCTTATAGAAGATAAAGGAAATTGGCAGGATTCTGGTTTTAATTCTTTAAGCACATCCAGTTGGCCCAAAGATAATGTGTGTTCAGGCTCAACATGTGAGGTTAGTTATCGAAACAATGAGCAGGAAGTTAACAAAGTTGATTTTCGACAATCCTTGGAACGGTTCCTTCTTCATCCACACCAACAACACAAAGTTATGCAAGATAGCTCTCAGAGAGTACTTTTACAAGCAGAATCCAATTTAAAATCGGATCTAGAGGTCGATAGAAGCGTAGATGGAATACAGGACATTTGTTTCACTTCAAAGAAGAGTCTATTACATGCATCAGTGGCAGAAGACGGCCTGAAGAAACTCGACAGTTTCAACCGATGGATGAGTAAAGAACTAGGAGATGTCAAAGAATCGAGCAAGCAATCCACTTCTAGTGCTTATTGGGATACAATCGAAAGCGAAAATGGAATTGACAGTATAACTATTCCTTCCCAAGTGCACCTAGACAACTATGTCCTGGATCCATCTATTTGCTACGATCAGCTTTTCACAATCATTGATTATTCCCCAAGTTGGACATTTGAAGACTCAGAAACTAAGGTTCTCATTTCGGGACGATTCTTAAGGAGTCAACATGAAGCAGAAGATTATAAATGGTCATGTATGTTTGGCGAGGTAGAAGTGCCAGCGGAGATAATCGGGAATGGTGTTCTCTGCTGTCATACTCCACCACACAAGGCTGGCAGGGTTCCTTTCTATGTAACATGTTCTAATAGGTTAGCATGTAGTGAAGTGCGTGAATTCGATTTTCGAGTCAATTGTACTCAAGAAGCCAACACTGCAGGTGAGAACAGAAGCGGCAACACTCTTGATACTTTTAATAAACGGTTTGGAGAACTGTTGTCGCAGGATCAAGAGATCCCTCAGAGTTTAGATTCAATTAGTGTGAATGAGAAATCTCAACTGAGAAGTAAAATCAGTTCATTGTTTAGGAGGGAGGATGATGAATGGGAAAAAATACTGAAATATACTCTAGAGAAAGATTTTTCTCCAGAACTTGTACAGGAGAAGCTGTTTCAAAATCTTCTAAAGGATAAGCTAAATTCATGGCTCCTTCAGAAAACAACCGAAGATGGAAAAGGCCCAAATGTATTAGATGAAGGTGGTCAAGGTGTGCTTCATTTTGCAGCTGCTCTTGGCTACGATTGGGCCTTAGAACCAACAATAGTTGCTGGTGTGAATGTGAACTTTCGCGATGTTAATGGATGGACTGCTCTTCATTGGGCAGCTTTTTGTGGCAGGGAGAGGACAGTTGCTTCCCTCATTTCTCTTGGAGCAGCACCAGGAGCACTTACTGACCCATGTCCACAACATCCTTCTGGTAGAACACCAGCTGACCTAGCTTCTGCAAATGGACACAAAGGAATTGCTGGTTATCTTGCAGAATCTTTCCTGAGTGCACAGCTCAAGTCTATTGATTTGAAAAGAGAAGCGGGAGAAAGTTTTGGATCAAAAATAGTACAAAGAGTCCATGAACAAAACACTTTTCAACTTAACAATGAGAGAATATCACATGAACTGTCAATGAAAGATTCATTGGCTGCAGTGTGCAATGCAACTCAAGCTGCGGCTCGTATTCATCAAGTTTTCAGAGTTCAATCGTTTCAGAGAAAACAGCAAAAGGAACATGGTGTTGACAAATTTGGAATGTCTGATGAACGCGCTCTTTCACTGATAGCAGCAAATGCCAAGTCGCACAAGTTTGGCCAACGTGATGAGCCTGTTCATGTTGCTGCAACACGAATTCAGAACAAGTTTCGCAGTTGGAAAGGCAGAAAAGATTTTTTGATTATTCGACAGCGAATTGTAAAAATTCAGGCTCACGTGAGAGGTCACCAAGTTAGGAAAAACTATGGAAAGATAATTTGGTCGGTTGGGATCGTGGAAAAGATTATATTGCGTTGGCGTCGAAAAGGTAGTGGTTTGCGTGGATTCAAATCTGAGGCCATCTCCGAGGGAGCTATGGTACAAGATGCATCATCTTCCACTGAAGATGACTATGATTTTTTGAAAGAAGGCAGAAAGCAAACTGAGAAAAGGTTGGAGAAAGCACTTGCTAGGGTGAAGTCGATGGCTCAGTATCCAGATGCAAGAGACCAATACCACAGGCTATTGAATGTTGTAACTGATATACAAGAAAACCAGGTAAAGCAAGATTCGAGTTTTAGCAATTCAGAAGAAACAAGACAGAGACAATTCAATAACCTCGTTGATCTTGAAGCATTGTTGGACGAAGATACTTTCATGTCTACAGACACTTAG 3246 0.4039 MALNNNRYLQPNQFDIQQILSEAQYRWLRPAEICQILTNHNHFQITSEPANMPPSGSLFLFDRKVMRYFRKDGHNWRKKKDGKTVREAHERLKAGSVEVLHCYYAHGEQNQNFQRRTYWMLEDELSHIVLVHYREVKGNKETLICSKENEESNPHYAQQTYKAMPNTEMETSLPSSMNSAQPSDYEEAESAFNSHANSDFHSFLEMQHPVVQKIKAQQLADFNCPLPLKDGLERLPVINNVGLTCEPSKLLGFSSWQDILENNAGSHNVPFQHFFPETQFNDMGINSTSQGYEVMGQHLSIGITNHHENGSLIEDKGNWQDSGFNSLSTSSWPKDNVCSGSTCEVSYRNNEQEVNKVDFRQSLERFLLHPHQQHKVMQDSSQRVLLQAESNLKSDLEVDRSVDGIQDICFTSKKSLLHASVAEDGLKKLDSFNRWMSKELGDVKESSKQSTSSAYWDTIESENGIDSITIPSQVHLDNYVLDPSICYDQLFTIIDYSPSWTFEDSETKVLISGRFLRSQHEAEDYKWSCMFGEVEVPAEIIGNGVLCCHTPPHKAGRVPFYVTCSNRLACSEVREFDFRVNCTQEANTAGENRSGNTLDTFNKRFGELLSQDQEIPQSLDSISVNEKSQLRSKISSLFRREDDEWEKILKYTLEKDFSPELVQEKLFQNLLKDKLNSWLLQKTTEDGKGPNVLDEGGQGVLHFAAALGYDWALEPTIVAGVNVNFRDVNGWTALHWAAFCGRERTVASLISLGAAPGALTDPCPQHPSGRTPADLASANGHKGIAGYLAESFLSAQLKSIDLKREAGESFGSKIVQRVHEQNTFQLNNERISHELSMKDSLAAVCNATQAAARIHQVFRVQSFQRKQQKEHGVDKFGMSDERALSLIAANAKSHKFGQRDEPVHVAATRIQNKFRSWKGRKDFLIIRQRIVKIQAHVRGHQVRKNYGKIIWSVGIVEKIILRWRRKGSGLRGFKSEAISEGAMVQDASSSTEDDYDFLKEGRKQTEKRLEKALARVKSMAQYPDARDQYHRLLNVVTDIQENQVKQDSSFSNSEETRQRQFNNLVDLEALLDEDTFMSTDT 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi485g00056 1081 ProSiteProfiles CG-1 DNA-binding domain profile. 16 142 IPR005559 GO:0003677
Vivi485g00056 1081 ProSiteProfiles Ankyrin repeat region circular profile. 729 754 - -
Vivi485g00056 1081 SUPERFAMILY E set domains 492 578 IPR014756 -
Vivi485g00056 1081 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 891 953 IPR027417 -
Vivi485g00056 1081 SUPERFAMILY Ankyrin repeat 685 791 IPR036770 -
Vivi485g00056 1081 Coils Coil 995 1015 - -
Vivi485g00056 1081 Pfam IPT/TIG domain 492 567 IPR002909 -
Vivi485g00056 1081 Pfam IQ calmodulin-binding motif 928 946 IPR000048 GO:0005515
Vivi485g00056 1081 Pfam Ankyrin repeats (3 copies) 701 791 IPR002110 GO:0005515
Vivi485g00056 1081 ProSiteProfiles IQ motif profile. 926 950 IPR000048 GO:0005515
Vivi485g00056 1081 ProSiteProfiles Ankyrin repeat profile. 729 761 IPR002110 GO:0005515
Vivi485g00056 1081 Pfam CG-1 domain 22 135 IPR005559 GO:0003677
Vivi485g00056 1081 FunFam Calmodulin-binding transcription activator 2 902 950 - -
Vivi485g00056 1081 FunFam Calmodulin-binding transcription activator 2 658 805 - -
Vivi485g00056 1081 Gene3D Immunoglobulins 486 583 IPR013783 -
Vivi485g00056 1081 SMART CG_1_2 19 137 IPR005559 GO:0003677
Vivi485g00056 1081 Gene3D - 657 817 IPR036770 -
Vivi485g00056 1081 SMART iq_5 902 924 IPR000048 GO:0005515
Vivi485g00056 1081 SMART iq_5 925 947 IPR000048 GO:0005515
Vivi485g00056 1081 FunFam Calmodulin-binding transcription activator 2 486 583 - -
Vivi485g00056 1081 Gene3D - 902 949 - -
Vivi485g00056 1081 SMART ANK_2a 768 797 IPR002110 GO:0005515
Vivi485g00056 1081 SMART ANK_2a 729 758 IPR002110 GO:0005515
Vivi485g00056 1081 ProSiteProfiles IQ motif profile. 904 932 IPR000048 GO:0005515
Vivi485g00056 1081 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 14 1042 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi485g00056 13 1055 CAMTA Transcription Factor Family AT5G64220 47.785 0.0 885
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Vivi485g00056 Ank_2 4.3e-07 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi485g00056 K21596 - gmx:100798875 1545.02