Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi485g00030 ATGTCTCATTCAAAATATGATGTGTTCATCAGCTTTAGAGGGGAGGACACTCGCGAAAACTTCACTAGTCATCTTCATGCAGAATTGCGTAGACAAAATATTGAAACATTCATAGATAATAGACTGGTCAGGGGCCAAGAGATTTCTCCAGCACTGTGTAAAGCAATAGAAGAATCAGCTATTTATGTGGTCATTTTGTCAGAACACTATGCTTCTTCCACATGGTGCTTGGAAGAACTCACAAAGATACTGGAATGTAAGGAGAGATATGGAAGGGAAGTGATACCTATATTCTATAGGGTGGATCCGTCAAATGTTAGGCATCAGAGACAAAGTTATGCTGACGATTTTGTTAAACATCATCTATGTTTTGGGGACAAAGTGGACGTATGGAAGGCTGCTCTGTCCCAAGTAGCTAATCTCTCTGGCTGGGATTCACAAAAAATCAGGCCAGATAGCAATTTTGTTGAAGAGATTGTGAAAGATATTGTGAAAAAATTGAGTAGTTGTGCCTCAAATGATCATGAAGAAAAGATTGGAATTGACAAACATCTTGAACAAATTCAAACCTTGTTGCACCTCGAGTCATTAACTGTTCGTATTCTAGGAATATGGGGTATGGGAGGGATAGGAAAAACTGAAATTGCTGGTGCAATCTATGAAAAACTCGCAACTCATTTTAGTTTTAGTGGCATAGTTAAAAATGTTCAACAGGAAATAAAACTATATGGAGTAGACCATGTAAAAAGCAAATACTTATCGCACCTTCTAGTTCAACAAGACAAACGTTTCAACGTTTCATTTGATCCGAGGCTCAAACGGACAAACGTTCTTCTTGTTTTTGATGATGTGAAAGATTCTGATCAATTTATTGATTTAATTGGGACATGTAGTAATTTTGGCCTCGGAAGTAGAATCATTGTGACTAGTAGGGACAAACAAGTGCTTAAGAATGCCAATGTTGATGAAATATATCACGTAGTTGAGATGGATGATAACAATTCTCTACAACTCTTCTGCTTAAATGCTTTTAAACAAAAAGAACCAAGAGAAACTTATGTGACTTTAACGACAAAGGTATTAAATTATGCTAAAGGAGTTCCACTAGCTCTTAAAGTTTTGGGCTTATTTCTTCAGGATAGAGCAAAGGAGTCATGGGAAAGTGAGTTGCAAAAGCTTGAAAAGATTCCCGAGCCTGGAATTTTCAATGTGTTGAAATTGAGTTATGATGGACTTGACGACGAACAAAAAGATATATTTCTTGATATAGCTTGTTTGTGTAGAGGAGAAGCCGAGGAATGTGTAGTTCAAACATTGGATTGTTATGGTTTTTCTACTCGTATTGGAATGGATGTTCTTCAAGATAGGTCTCTTATATCTATTTCAGAAGGTAGAGTTTGGATGCATGATCGAATACAAGAAATGGGACATGAAATTGTTCGACAACAAAGTGTCAATAATCCGGAAAAACGTAGTCGATTACACAAACCTGATGATATATATGATGTTTTAACAAAGAACAAGGGACAAGGAACAGATGCAATCCAGAGCATAGTATTGGACTTAAACAAAATAAAAAAAGTTCAGTTACATGCCAAAACTTTTAAGAAAATGCATAATCTCAAAATGATTCAGTTTTACAAAACTTATTGGTTTGAAAGTTACTCAAATGTGACATTTCATACATTTCTTAATAGTTTTCCGGATAATTTAAAATTTCTTGGTTGGACTGGTTTCCCTCAAAAATCTTTGCCGCAAGATTTTTGTCCAAATAATCTTGTTGCACTTGATATGCCTTCAAGCGACCTTGAACAACTATGGGAGAGAGATCAGACTTTACCAAATTTGAAGAGACTTGACCTTAGCTATTCTGAGAAGATTATTGGATTACCAGACCTGTCTTTGTTTCCAAATATTGAAGAAATAATTCTCACTGGTTGTCTAAGTTTGGAACAAGTTTACTCCTCTAGCATCCTCCATAAACTTAACTGGTTATATGCAGATGGTTGTACATCACTCAAGAGTTTAAGTATTCCTAGCAATATTCTATCAAGATCAACTGGATCAGTTCATCTGTATGGTTGTCGCAACCTTGAAACAATTTTAATCACCAGTTCAACTGATGTATATGGATATTTAAACTGCGAATTTGATGATAAAACAGTAATAGATTCATATTTTGCGAGAGGCTACGGGTTTTTGGGTGATATATATAAAAGGATGTTTTCAAATTTCAACGAGTTTTGTTGCTTAGATCTGTTGGAATGTGAGTCCCTAACATGCCTACCAGCTGAATTCTTCAATTTGAAGTTTCTAACAAGATTTCGTCTCAGTGGTTCTATAGAAAACTTAGTAGCGCTTCACTTAGACGGTACAGCAATTACAGAACTACCTTCATCATTGCATCATTTGGTTAGGCTTGAAGAATTGACTTTGCGAGGTTGCAGAAAGCTTAAGACTATTCCATCTTCCATTGGAAATCTCAGCAAACTTCTCAAATTACACCTTACTTACTGTGACTCACTTGAAACTTTCCCAAGCAGCATTTTCAAATTGAAGTTGACAGCACTTGATTTTAATGGTTGCTCAATGCTTAGGACCTTTCCAGAAGTCCCATCTGACATTGGTGTATTATCATCCTTGACTGAAATTTCACTGCGAGGAACCAATATTGTGACCCTTCCTGACAGTATGGTTCATCTCTCAAGTTTGACATCACTTGATTTAAGTGATTGCAAAAGCCTTGAATGTATTCCAAAGCTTCCGCCATGTCTAAATGAGTTGTTGGCATTTGATTGCACATCCATTAAGAAAGTGGTGCAAAATCCATTGTTGAAACTCATGTCTGATTCCAATGACGAAATGGATAGTATCTGCGAGTTCCATCTCACCAACAGTGAAGAGTTAGAGGCATCTTCTTGGAGTTATATAGTAAACGAAGCATTGATTAAGATCACTGATAATGCATATCTGTCAGCGCTCTTCTGTTTTCCAGGGAGTAAGGTTCCGGATTGGTTCATTCACCGTTGCCAGGGACATTCAATAACTGTGAAAAGTAATTATGAACATTTGTGCAGTGAAAAGAAGCTCATTGGTTTTGCTCTCTGTTTTGTTTTTAGAGATGAAGTCATGGATGGCACAAGAATAGGAGTTAGAGGCATTGAATACAAATTAAGCTTTATATCTGATAGTAAGCTAGACTTTTCATATGGCAAGTTGAATTGTGAGTATCGAGATAGGTCTTTCATCCAAAATCACACGCTTATATGGAATCATCAAATTGACTTAGCAAGAATTAGCAATAGTTTCTTTGATGCCTACAACATCAATTTTGAGATCCTAGGTGAAATTTGGCCCTCACGTTATCAATTAAACGTCAAGGTGAAAGAGTGTGGATTACGTCCTCTGTTTATTACCAAAGAACCGAATGCAAGCAAAGCTGCACAATAA 3450 0.3646 MSHSKYDVFISFRGEDTRENFTSHLHAELRRQNIETFIDNRLVRGQEISPALCKAIEESAIYVVILSEHYASSTWCLEELTKILECKERYGREVIPIFYRVDPSNVRHQRQSYADDFVKHHLCFGDKVDVWKAALSQVANLSGWDSQKIRPDSNFVEEIVKDIVKKLSSCASNDHEEKIGIDKHLEQIQTLLHLESLTVRILGIWGMGGIGKTEIAGAIYEKLATHFSFSGIVKNVQQEIKLYGVDHVKSKYLSHLLVQQDKRFNVSFDPRLKRTNVLLVFDDVKDSDQFIDLIGTCSNFGLGSRIIVTSRDKQVLKNANVDEIYHVVEMDDNNSLQLFCLNAFKQKEPRETYVTLTTKVLNYAKGVPLALKVLGLFLQDRAKESWESELQKLEKIPEPGIFNVLKLSYDGLDDEQKDIFLDIACLCRGEAEECVVQTLDCYGFSTRIGMDVLQDRSLISISEGRVWMHDRIQEMGHEIVRQQSVNNPEKRSRLHKPDDIYDVLTKNKGQGTDAIQSIVLDLNKIKKVQLHAKTFKKMHNLKMIQFYKTYWFESYSNVTFHTFLNSFPDNLKFLGWTGFPQKSLPQDFCPNNLVALDMPSSDLEQLWERDQTLPNLKRLDLSYSEKIIGLPDLSLFPNIEEIILTGCLSLEQVYSSSILHKLNWLYADGCTSLKSLSIPSNILSRSTGSVHLYGCRNLETILITSSTDVYGYLNCEFDDKTVIDSYFARGYGFLGDIYKRMFSNFNEFCCLDLLECESLTCLPAEFFNLKFLTRFRLSGSIENLVALHLDGTAITELPSSLHHLVRLEELTLRGCRKLKTIPSSIGNLSKLLKLHLTYCDSLETFPSSIFKLKLTALDFNGCSMLRTFPEVPSDIGVLSSLTEISLRGTNIVTLPDSMVHLSSLTSLDLSDCKSLECIPKLPPCLNELLAFDCTSIKKVVQNPLLKLMSDSNDEMDSICEFHLTNSEELEASSWSYIVNEALIKITDNAYLSALFCFPGSKVPDWFIHRCQGHSITVKSNYEHLCSEKKLIGFALCFVFRDEVMDGTRIGVRGIEYKLSFISDSKLDFSYGKLNCEYRDRSFIQNHTLIWNHQIDLARISNSFFDAYNINFEILGEIWPSRYQLNVKVKECGLRPLFITKEPNASKAAQ 1149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi485g00030 1149 PRINTS Disease resistance protein signature 271 285 - -
Vivi485g00030 1149 PRINTS Disease resistance protein signature 364 378 - -
Vivi485g00030 1149 PRINTS Disease resistance protein signature 899 915 - -
Vivi485g00030 1149 PRINTS Disease resistance protein signature 201 216 - -
Vivi485g00030 1149 FunFam Disease resistance protein (TIR-NBS-LRR class) 2 169 - -
Vivi485g00030 1149 Pfam TIR domain 5 174 IPR000157 GO:0007165
Vivi485g00030 1149 Gene3D - 169 327 IPR027417 -
Vivi485g00030 1149 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 144 IPR035897 -
Vivi485g00030 1149 SMART till_3 5 141 IPR000157 GO:0007165
Vivi485g00030 1149 SUPERFAMILY L domain-like 468 779 - -
Vivi485g00030 1149 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 6 765 IPR044974 GO:0006952
Vivi485g00030 1149 Pfam C-JID domain 997 1136 IPR045344 -
Vivi485g00030 1149 Gene3D - 1 168 IPR035897 -
Vivi485g00030 1149 Gene3D - 329 413 IPR042197 -
Vivi485g00030 1149 Gene3D Ribonuclease Inhibitor 781 975 IPR032675 -
Vivi485g00030 1149 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 423 IPR027417 -
Vivi485g00030 1149 SUPERFAMILY L domain-like 737 933 - -
Vivi485g00030 1149 Gene3D Ribonuclease Inhibitor 452 780 IPR032675 -
Vivi485g00030 1149 ProSiteProfiles TIR domain profile. 4 167 IPR000157 GO:0007165
Vivi485g00030 1149 Pfam NB-ARC domain 182 395 IPR002182 GO:0043531
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi485g00030 780 919 WRKY Transcription Factor Family AT4G12020 33.333 3.29e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi485g00030 - - vvo:131603215 2303.09