Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi47g00005 ATGGCTTCCATAACTGTAATTGGCGCTTCCTCAACATGCAAACTCCCCTCTCTCGAACTCTACAAAAAGTATAAACTAACCTCCATTTCCACCGTTAAACTCCACTCTTTCGACGGTAACAAATCCCGCCACGTCACCAACAACCTCCTCCTTAGACACAACCGTCTCGCCAATTTCAGTTCCTCCGATAGGTTTCTTCCTTCCGCCGTCGCGACTCCGAATTCCTCCTCCTCTTCGCTTCTCAGCGATGAAGCATTTCAAGGATTAGGCTCTGATTTCGAAGGTGATGAAGATGAGGATTTTCCTTCTCGAACTGCTTCGCTTAACGCCGATGAACTTGACATTTCGAAACTTGATTTGCCTTCGCAACTTGTTGATTCGCTCCGTGAGAGGGGGATTACGCAGCTTTTTCCTATTCAGAGAGCGGTGTTAGTTCCTGCACTTCAAGGTAGAGATATCATTGCTCGTGCAAAGACTGGAACAGGGAAGACATTGGCTTTTGGAATTCCTATTATTAATGGTCTCGACGATGGCGAGGGTGAGGATTCAGGTCGTTACAGTAACAGGCGACTTCCTAGAGCTTTGGTACTTGCACCTACCAGGGAGTTAGCGAAGCAAGTGGAGAAGGAGATAAAAGAATCTGCACCTTATCTCAAAACGGTTTGTATTTATGGAGGTGTTTCTTATACTTCTCAGCAGGGTGCACTTTCACGTGGGGTTGATGTAGTTGTTGGAACGCCCGGTAGACTGATTGATCTCATCAACGGGAACACACTTAAGTTGAGCGAAGTTGAGTATTTGGTGCTTGATGAAGCTGATCAAATGCTTGCTGTTGGGTTTGAGGAGGCTGTGGAAGTCATTTTGGAAAAGCTTCCAGCTAAGAGACAGAGCATGCTTTTTTCTGCAACCATGCCTAGTTGGGTGAAGAAATTGGCCAGAAAATATTTGGACAATCCGTTGACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTGTACGCTATATCAGCAACTACCACTTCTAAGAGAACAATTCTTTCTGATCTTATTACGGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACTCAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATCACTTCTGAAGCACTGCATGGCGATATATCTCAGCATCAAAGAGAGAGAACATTGAATGGTTTCAGACAAGGAAAGTTTACAGTGCTTGTTGCCACTGATGTGGCATCTCGTGGACTTGATATCCCCAATGTTGATTTGATTATCCATTACGAGCTTCCCAATGATCCTGAGACTTTTGTACATCGCTCTGGCCGTACTGGCCGTGCGGGAAAGCTAGGTTCTGCCATTCTGATGTATACGGGTAACCAGAGAAGAACAGTTAGATCCCTTGAGCGTGATGTAGGATGCAAATTTGAATTTGTTAACGCACCGTCTATGGAGGATGTTTTGGAGGCATCTGCCGATCAAGTTGTTGTCACACTTAATGGAGTCCATCCCGAGTCTATTGCATTTTTCACCCCTACTGCACAGAAACTGATCGAAGAAAAAGGAACAGATGCCCTTGCAGCTGCACTGGCACAGCTGAGTGGATTCTCCAAACCTCCGTCTTCCCGGTCTCTCATCACCCATGAACAGGGATGGGTTACATTGCAATTAACCCGAGATTCAGAAAATTCTCAAAGATATTTTTCAGCAAGAGCAGTCACCGGGTTTCTTTCCGATGTATATTCCAAAGCTGCTGACAATGTTGGAAAAATACATTTAATTGCAGATGAAATGGTTCAAGGAGCTGTTTTTGATCTTCCAGACGACATTGCTAAAGAGTTACTTGAGAAGGACATACCATCTGGAAACACTCTTTCCAAAGTCGCTAAGTTACCTCCTTTGCAAGATGATGGACCTCCAAGTGATTTCTACGGGAAGTTTTCCGATAGAGAACGAAGTAGCCGAAGAGGTTCAAGGGATGGTAGAGGTTTTAGATCCTCAAGGGGATGGGATGGAGGCCGAGGCTCTAGTGACGACTTTGGCGGCTCAAGGAGGGGTGGCAGAGGCTCTAATGATGACTTTGGTGACTCAAGGAGGGGTGGCAGAGGCTCTAATGATGACTTTGGTGACTCAAGGAGGGGTGGCAGAAGTAGTTTTAAATCTGGCAACAGCTGGTCCAAACCTGAAAGAAGCAGCCGGGATGATTGGCTAATTGGAGGCAGACAATCAAGCAGGTCTCCATCATCATCCAACAGAAGCTTTGAAGGGGCCTGTTTTAGTTGTGGGGAATCTGGGCACCGAGCGTCAGACTGTCCAAACAGGCTAGGCGGCTCTTTTTAA 2364 0.4535 MASITVIGASSTCKLPSLELYKKYKLTSISTVKLHSFDGNKSRHVTNNLLLRHNRLANFSSSDRFLPSAVATPNSSSSSLLSDEAFQGLGSDFEGDEDEDFPSRTASLNADELDISKLDLPSQLVDSLRERGITQLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIINGLDDGEGEDSGRYSNRRLPRALVLAPTRELAKQVEKEIKESAPYLKTVCIYGGVSYTSQQGALSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQMLAVGFEEAVEVILEKLPAKRQSMLFSATMPSWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLYAISATTTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGSAILMYTGNQRRTVRSLERDVGCKFEFVNAPSMEDVLEASADQVVVTLNGVHPESIAFFTPTAQKLIEEKGTDALAAALAQLSGFSKPPSSRSLITHEQGWVTLQLTRDSENSQRYFSARAVTGFLSDVYSKAADNVGKIHLIADEMVQGAVFDLPDDIAKELLEKDIPSGNTLSKVAKLPPLQDDGPPSDFYGKFSDRERSSRRGSRDGRGFRSSRGWDGGRGSSDDFGGSRRGGRGSNDDFGDSRRGGRGSNDDFGDSRRGGRSSFKSGNSWSKPERSSRDDWLIGGRQSSRSPSSSNRSFEGACFSCGESGHRASDCPNRLGGSF 787
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi47g00005 787 Gene3D - 753 786 - -
Vivi47g00005 787 Pfam DEAD/DEAH box helicase 137 311 IPR011545 GO:0003676|GO:0005524
Vivi47g00005 787 Gene3D - 338 534 IPR027417 -
Vivi47g00005 787 Pfam Helicase conserved C-terminal domain 348 456 IPR001650 -
Vivi47g00005 787 CDD SF2_C_DEAD 336 465 - -
Vivi47g00005 787 FunFam Nucleolar RNA helicase II 344 534 - -
Vivi47g00005 787 MobiDBLite consensus disorder prediction 651 675 - -
Vivi47g00005 787 MobiDBLite consensus disorder prediction 745 765 - -
Vivi47g00005 787 Pfam GUCT (NUC152) domain 543 643 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vivi47g00005 787 FunFam ATP-dependent RNA helicase RhlE 105 325 - -
Vivi47g00005 787 SUPERFAMILY Retrovirus zinc finger-like domains 746 784 IPR036875 GO:0003676|GO:0008270
Vivi47g00005 787 Pfam Zinc knuckle 765 781 IPR001878 GO:0003676|GO:0008270
Vivi47g00005 787 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 322 IPR014001 -
Vivi47g00005 787 SMART ultradead3 132 339 IPR014001 -
Vivi47g00005 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 477 IPR027417 -
Vivi47g00005 787 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 107 650 - -
Vivi47g00005 787 MobiDBLite consensus disorder prediction 631 787 - -
Vivi47g00005 787 Gene3D - 114 326 IPR027417 -
Vivi47g00005 787 SMART helicmild6 376 456 IPR001650 -
Vivi47g00005 787 ProSiteProfiles Zinc finger CCHC-type profile. 766 781 IPR001878 GO:0003676|GO:0008270
Vivi47g00005 787 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 497 IPR001650 -
Vivi47g00005 787 CDD DEADc 124 323 - -
Vivi47g00005 787 SMART c2hcfinal6 765 781 IPR001878 GO:0003676|GO:0008270
Vivi47g00005 787 CDD GUCT_Hera 550 630 - -
Vivi47g00005 787 MobiDBLite consensus disorder prediction 693 722 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi47g00005 95 478 Eukaryotic Initiation Factors Gene Family AT1G72730 35.641 2.21e-63 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi47g00005 - - gmx:100789516 1017.3