Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi47g00004 ATGGCTTCCATAACTGTAATTGGCGCTTCCTCAACATGCAAACTCCCCTCTCTCGAACTCTACAAAAAGTATAAACTAACCTCCATTTCCACCGTTAAACTCCACTCTTTCGACGGTAACAAATCCCGCCACGTCACCAACAACCTCCTCCTTAGACACAACCGTCTCGCCAATTTCAGTTCCTCCGATAGGTTTCTTCCTTCCGCCGTCGCGACTCCGAATTCCTCCTCCTCTTCGCTTCTCAGCGATGAAGCATTTCAAGGATTAGGCTCTGATTTCGAAGGTGATGAAGATGAGGATTTTCCTTCTCGAACTGCTTCGCTTAACGCCGATGAACTTGACATTTCGAAACTTGATTTGCCTTCGCAACTTGTTGATTCGCTCCGTGAGAGGGGGATTACGCAGCTTTTTCCTATTCAGAGAGCGGTGTTAGTTCCTGCACTTCAAGGTAGAGATATCATTGCTCGTGCAAAGACTGGAACAGGGAAGACATTGGCTTTTGGAATTCCTATTATTAATGGTCTCGACGATGGCGAGGGTGAGGATTCAGGTCGTTACAGTAACAGGCGACTTCCTAGAGCTTTGGTACTTGCACCTACCAGGGAGTTAGCGAAGCAAGTGGAGAAGGAGATAAAAGAATCTGCACCTTATCTCAAAACGGTTTGTATTTATGGAGGTGTTTCTTATACTTCTCAGCAGGGTGCACTTTCACGTGGGGTTGATGTAGTTGTTGGAACGCCCGGTAGACTGATTGATCTCATCAACGGGAACACACTTAAGTTGAGCGAAGTTGAGTATTTGGTGCTTGATGAAGCTGATCAAATGCTTGCTGTTGGGTTTGAGGAGGCTGTGGAAGTCATTTTGGAAAAGCTTCCAGCTAAGAGACAGAGCATGCTTTTTTCTGCAACCATGCCTAGTTGGGTGAAGAAATTGGCCAGAAAATATTTGGACAATCCGTTGACAATTGATTTGGTTGGTGATGAAGAAGAAAAGCTTGCTGAAGGGATAAAACTGTACGCTATATCAGCAACTACCACTTCTAAGAGAACAATTCTTTCTGATCTTATTACGGTTTATGCAAAGGGTGGGAAGACTATAGTTTTTACTCAGACAAAAAGAGATGCTGATGAAGTATCATTGGCATTAACAAATAGTATCACTTCTGAAGCACTGCATGGCGATATATCTCAGCATCAAAGAGAGAGAACATTGAATGGTTTCAGACAAGGAAAGTTTACAGTGCTTGTTGCCACTGATGTGGCATCTCGTGGACTTGATATCCCCAATGTTGATTTGATTATCCATTACGAGCTTCCCAATGATCCTGAGACTTTTGTACATCGCTCTGGCCGTACTGGCCGTGCGGGAAAGCTAGGTTCTGCCATTCTGATGTATACGGGTAACCAGAGAAGAACAGTTAGATCCCTTGAGCGTGATGTAGGATGCAAATTTGAATTTGTTAACGCACCGTCTATGGAGGATGTTTTGGAGGCATCTGCCGATCAAGTTGTTGTCACACTTAATGGAGTCCATCCCGAGTCTATTGCATTTTTCACCCCTACTGCACAGAAACTGATCGAAGAAAAAGGAACAGATGCCCTTGCAGCTGCACTGGCACAGCTGAGTGGATTCTCCAAACCTCCGTCTTCCCGGTCTCTCATCACCCATGAACAGGGATGGGTTACATTGCAATTAACCCGAGATTCAGAAAATTCTCAAAGATATTTTTCAGCAAGAGCAGTCACCGGGTTTCTTTCCGATGTATATTCCAAAGCTGCTGACAATGTTGGAAAAATACATTTAATTGCAGATGAAATGGTTCAAGGAGCTGTTTTTGATCTTCCAGACGACATTGCTAAAGAGTTACTTGAGAAGGACATACCATCTGGAAACACTCTTTCCAAAGTCGCTAAGTTACCTCCTTTGCAAGATGATGGACCTCCAAGTGATTTCTACGGGAAGTTTTCCGATAGAGAACGAAGTAGCCGAAGAGGTTCAAGGGATGGTAGAGGTTTTAGATCCTCAAGGGGATGGGATGGAGGCCGAGGCTCTAGTGACGACTTTGGCGGCTCAAGGAGGGGTGGCAGAGGCTCTAATGATGACTTTGGTGACTCAAGGAGGGGTGGCAGAAGTAGTTTTAAATCTGGCAACAGCTGGTCCAAACCTGAAAGAAGCAGCCGGGATGATTGGCTAATTGGAGGCAGACAATCAAGCAGGTCTCCATCATCATCCAACAGAAGCTTTGAAGGGGCCTGTTTTAGTTGTGGGGAATCTGGGCACCGAGCGTCAGACTGTCCAAACAGGCTAGGCGGCTCTTTTTAA 2322 0.4522 MASITVIGASSTCKLPSLELYKKYKLTSISTVKLHSFDGNKSRHVTNNLLLRHNRLANFSSSDRFLPSAVATPNSSSSSLLSDEAFQGLGSDFEGDEDEDFPSRTASLNADELDISKLDLPSQLVDSLRERGITQLFPIQRAVLVPALQGRDIIARAKTGTGKTLAFGIPIINGLDDGEGEDSGRYSNRRLPRALVLAPTRELAKQVEKEIKESAPYLKTVCIYGGVSYTSQQGALSRGVDVVVGTPGRLIDLINGNTLKLSEVEYLVLDEADQMLAVGFEEAVEVILEKLPAKRQSMLFSATMPSWVKKLARKYLDNPLTIDLVGDEEEKLAEGIKLYAISATTTSKRTILSDLITVYAKGGKTIVFTQTKRDADEVSLALTNSITSEALHGDISQHQRERTLNGFRQGKFTVLVATDVASRGLDIPNVDLIIHYELPNDPETFVHRSGRTGRAGKLGSAILMYTGNQRRTVRSLERDVGCKFEFVNAPSMEDVLEASADQVVVTLNGVHPESIAFFTPTAQKLIEEKGTDALAAALAQLSGFSKPPSSRSLITHEQGWVTLQLTRDSENSQRYFSARAVTGFLSDVYSKAADNVGKIHLIADEMVQGAVFDLPDDIAKELLEKDIPSGNTLSKVAKLPPLQDDGPPSDFYGKFSDRERSSRRGSRDGRGFRSSRGWDGGRGSSDDFGGSRRGGRGSNDDFGDSRRGGRSSFKSGNSWSKPERSSRDDWLIGGRQSSRSPSSSNRSFEGACFSCGESGHRASDCPNRLGGSF 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi47g00004 773 Pfam GUCT (NUC152) domain 543 643 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vivi47g00004 773 CDD SF2_C_DEAD 336 465 - -
Vivi47g00004 773 FunFam Nucleolar RNA helicase II 344 534 - -
Vivi47g00004 773 MobiDBLite consensus disorder prediction 651 675 - -
Vivi47g00004 773 Pfam DEAD/DEAH box helicase 137 311 IPR011545 GO:0003676|GO:0005524
Vivi47g00004 773 Gene3D - 739 772 - -
Vivi47g00004 773 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 144 322 IPR014001 -
Vivi47g00004 773 SUPERFAMILY Retrovirus zinc finger-like domains 732 770 IPR036875 GO:0003676|GO:0008270
Vivi47g00004 773 ProSiteProfiles Zinc finger CCHC-type profile. 752 767 IPR001878 GO:0003676|GO:0008270
Vivi47g00004 773 Gene3D - 114 326 IPR027417 -
Vivi47g00004 773 FunFam ATP-dependent RNA helicase RhlE 105 325 - -
Vivi47g00004 773 SMART ultradead3 132 339 IPR014001 -
Vivi47g00004 773 Pfam Zinc knuckle 751 767 IPR001878 GO:0003676|GO:0008270
Vivi47g00004 773 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 477 IPR027417 -
Vivi47g00004 773 MobiDBLite consensus disorder prediction 731 751 - -
Vivi47g00004 773 Pfam Helicase conserved C-terminal domain 348 456 IPR001650 -
Vivi47g00004 773 SMART helicmild6 376 456 IPR001650 -
Vivi47g00004 773 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 351 497 IPR001650 -
Vivi47g00004 773 CDD DEADc 124 323 - -
Vivi47g00004 773 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 107 650 - -
Vivi47g00004 773 MobiDBLite consensus disorder prediction 693 708 - -
Vivi47g00004 773 Gene3D - 338 534 IPR027417 -
Vivi47g00004 773 MobiDBLite consensus disorder prediction 632 773 - -
Vivi47g00004 773 SMART c2hcfinal6 751 767 IPR001878 GO:0003676|GO:0008270
Vivi47g00004 773 CDD GUCT_Hera 550 630 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi47g00004 95 478 Eukaryotic Initiation Factors Gene Family AT1G72730 35.641 1.77e-63 216
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi47g00004 - - gmx:100789516 1021.92