Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi479g00030 ATGAGTCAGCTCGGTTTGTTATTGCAGGAGACCCGGGCTGAGTCAAGAACGATTCTCGGTTTGTTAAACGAACAAATGGACGGTGTTGATGGAGTTCCTCGGAGGAGACGTAGCTTCAAGGAACGGTTTGGATTCATCGGGATAGGTTGCTGTGGAGCCACGCGTGGATTCCGTTCTTCTTCTTCTTCCTCTTCATCTCAATTACCTCAGCAACAAATTTCTGATACGGATCCGGTTCAGGATCCGAGCGTCTGCGTTGGCCCGAATCCAACTGCTTCCAGTTCGGGTAATATGAATCTTGCGGCGGCGCTAGCGGCGGAGCGACAACTCCGAAGACAGCCGGTGGAAACTGTCGCCGGAGGGGGTAGGAATTCGGGGACACCGTGGAGAGTGTCGTTGATGAGGCTGTTAGAGGAGACGGAAAATGGTGACACGGTGGAGGCAGAGACTGTGAGAGAGGTGAAAGTAGGTGGTGTGGCGGGGAATGATTCGGTGTGTTGCGTGTGCATGGGAAGGAATAAAGGCGCGGCGTTTATTCCATGTGGACACACTTTTTGCAGAGTCTGCTCTAGGGAGCTGTGGCTGAACAGAGGCTCCTGCCCACTTTGTAACCGTTCGATTAACGAGATTCTTGATATTTTCTAG 645 0.5225 MSQLGLLLQETRAESRTILGLLNEQMDGVDGVPRRRRSFKERFGFIGIGCCGATRGFRSSSSSSSSQLPQQQISDTDPVQDPSVCVGPNPTASSSGNMNLAAALAAERQLRRQPVETVAGGGRNSGTPWRVSLMRLLEETENGDTVEAETVREVKVGGVAGNDSVCCVCMGRNKGAAFIPCGHTFCRVCSRELWLNRGSCPLCNRSINEILDIF 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi479g00030 214 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 213 IPR013083 -
Vivi479g00030 214 CDD RING-HC 166 203 - -
Vivi479g00030 214 ProSiteProfiles Zinc finger RING-type profile. 166 204 IPR001841 -
Vivi479g00030 214 Pfam Zinc finger, C3HC4 type (RING finger) 163 209 - -
Vivi479g00030 214 PANTHER OS01G0917900 PROTEIN 9 214 - -
Vivi479g00030 214 MobiDBLite consensus disorder prediction 58 79 - -
Vivi479g00030 214 SUPERFAMILY RING/U-box 160 211 - -
Vivi479g00030 214 MobiDBLite consensus disorder prediction 58 93 - -
Vivi479g00030 214 SMART ring_2 166 203 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi479g00030 18 214 C3H Transcription Factor Family AT4G22250 52.736 4.63e-58 181
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi479g00030 - - gmx:100804959 243.432