Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi477g00001 ATGCATCCTGATCAGAGGAAAAAGTCATCGGTGGAGGTAGATTTCTTTACTGAATATGGTGAAGGGAGCAGATACAAAATAGAGGAAGTGATTGGTAAAGGAAGTTACGGTGTTGTTTGCTCTGCGTTTGATACACACACTGGAGAAAAGGTTGCTATAAAGAAAATCAATGACATATTTGAACATGTATCTGACGCGACTCGCATTCTTCGTGAGATTAAGCTTCTTAGACTTTTACGTCATCCGGATATTGTAGAGATCAAACATATTTTGTTGCCTCCTTCAAGAAGGGAGTTCAAAGATATATACGTTGTTTTTGAACTCATGGAATCTGATTTACATCAGGTCATCAAAGCAAATGATGACCTGACACCGGAGCATTACCAGTTTTTCCTCTATCAGCTTCTACGAGGCTTGAAGTATATACACACAGCAAATGTTTTTCACCGAGATTTAAAGCCAAAAAACATTTTGGCGAATGCTGACTGCAAACTGAAGATTTGTGACTTTGGTCTTGCCAGAGTAGCTTTTAATGATACACCCACTGCTATATTCTGGACAGATTATGTTGCAACAAGGTGGTATAGGGCTCCTGAGTTGTGTGGATCTTTTTTCTCCAAGTACACACCGGCTATAGACATATGGAGCATTGGCTGCATATTTGCAGAACTTTTAACCGGAAAACCTCTTTTCCCCGGGAAGAATGTTGTCCATCAATTGGATATCATGACTGATTTTCTTGGAACACCATCTCCTGATGCCATTGCAAGGGTACGGAATGAGAAAGCTCGGAGATACTTGAGCAGCATGCGTAAGAAGAAACCAGTTCCTTTTGCGCATAAATTTCCTAATACAGACCCCCTTGCTCTACGGCTGTTAGAAAGAATGCTGGCATTTGAGGCTAAGGATCGGCCTACTGCTGAAGAGGCTCTAGCAGATCCTTATTTTAAAGGCTTGGCCAAGGTCGAGAGAGAACCTTCTGCTCAGCCAGTTACTAAGATGGAATTTGAATTTGAGAGGCGGAGGATAACAAAGGAAGATGTAAGAGAGCTTATATACCGAGAAATATTGGAGTACCATCCGAAGATGTTAAAGGAATTTCTAGAGGGATCAGAGCCAACGGGTTTCATGTATCCAAGTGCTGTAGACCTTTTCAAGAAGCAATTTGCATATCTTGAGGAGCATTACGGAAAAGGGGGAACTGTTGCTCCACCTGAGCGGCAACATGCGTCTTCGTTGCCTAGAGCGTGTGTGTTGTATTCTGATGACACGATGCAGAATACGGCTGAGGTTGCAGAGGATCTATCCAAATGTTGCATCAAAGAAGTTGAGAAACCGCCTGTAGATAGGAGTAGTGATATTCTTCCAATGACCCGGCTTCCTTTACACACTCCTCAAAACGTTCAAGGTCTTGCTGCAAGGCCTGGAAAAGTTGTTGGTTCTGCAATGCATTATAACAACTGTGGGGTGGCAGCAGAAACTGAACAACGGAGGGTGGTTAAGAATGCATCTGTTTCGAATCAGTATGCTGCTTCAAGCTATCCGCGGAGAAATCCGAACTATAAAAGCGAGAGGATAGAAGATGACGGGATTGAAGTTTCTAACGGGATGCAACCAAAACCTCAATACATAGCTAGGAAAGTTGCTGCTGCTCAAGGCGGATCAGGTAGCCAGTGGTATTGA 1683 0.4296 MHPDQRKKSSVEVDFFTEYGEGSRYKIEEVIGKGSYGVVCSAFDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDIMTDFLGTPSPDAIARVRNEKARRYLSSMRKKKPVPFAHKFPNTDPLALRLLERMLAFEAKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLEGSEPTGFMYPSAVDLFKKQFAYLEEHYGKGGTVAPPERQHASSLPRACVLYSDDTMQNTAEVAEDLSKCCIKEVEKPPVDRSSDILPMTRLPLHTPQNVQGLAARPGKVVGSAMHYNNCGVAAETEQRRVVKNASVSNQYAASSYPRRNPNYKSERIEDDGIEVSNGMQPKPQYIARKVAAAQGGSGSQWY 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi477g00001 560 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi477g00001 560 FunFam Mitogen-activated protein kinase 111 339 - -
Vivi477g00001 560 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Vivi477g00001 560 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Vivi477g00001 560 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi477g00001 560 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Vivi477g00001 560 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi477g00001 560 CDD STKc_TDY_MAPK 24 361 - -
Vivi477g00001 560 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Vivi477g00001 560 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 340 - -
Vivi477g00001 560 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vivi477g00001 560 FunFam Mitogen-activated protein kinase 15 119 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi477g00001 1 560 MAP Kinase Gene Family AT5G19010 79.058 0.0 925
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vivi477g00001 Pkinase 7.5e-67 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi477g00001 - - gmx:100814013 1012.29