Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi475g00005 ATGGTGAAAACAAATGTGGAGAAACCTGCGGCGGAACGAAGTGATACATTGTTCCGAGGAGTGAGGAAGAGGAAGTGGGGAAAATATGTGTCGGAAATTAGATTACCAAACAGCCGTCAAAGAATATGGTTAGGCTCTTATGACTCCGCTGATAAAGCGGCGCGTGCATTTGACGCGGCGACATTCTGCTTACGTGGCAGTGGTGCTAGGTTTAATTTCCCGAGTAATATTCCGGATATTGCGGGTGGAAGTTCCATGACCCATTCTGAGATTCAAGCAGCTGCCGCCCGTTTTGCCAATTCGGTGGCCTGTAATGAGTATTCGGGTCGACCCGATAATACTCCAGATCAAACACCATCTTCCTCCGTGGAAACACCAATCACACCATTGTTGCCTATGGAGATGCCATCTCCTGCTCTCTCGGATGTTACAGTTCAAACGGAGAGTGATATATCAGATAACGAGTTGTTTAGAGATTTGTTTTCAGACACCGGATCGGGTTACACAATGTTTCCTGGGTTTGATGATTTTTGTGGCGATTTCTACGTGCCGGAGTTCTCAAATTTTGATTATGAACAAGAGAACATGGATGGGTTGATAATTCAAGAATCATTTTTATGGAGTTTCTAA 630 0.4476 MVKTNVEKPAAERSDTLFRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDSADKAARAFDAATFCLRGSGARFNFPSNIPDIAGGSSMTHSEIQAAAARFANSVACNEYSGRPDNTPDQTPSSSVETPITPLLPMEMPSPALSDVTVQTESDISDNELFRDLFSDTGSGYTMFPGFDDFCGDFYVPEFSNFDYEQENMDGLIIQESFLWSF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi475g00005 209 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Vivi475g00005 209 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 122 - -
Vivi475g00005 209 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Vivi475g00005 209 Pfam AP2 domain 18 66 IPR001471 GO:0003700|GO:0006355
Vivi475g00005 209 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Vivi475g00005 209 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Vivi475g00005 209 FunFam Ethylene-responsive transcription factor 2 16 75 - -
Vivi475g00005 209 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Vivi475g00005 209 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Vivi475g00005 209 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi475g00005 18 209 AP2-EREBP Transcription Factor Family AT1G19210 43.719 1.72e-44 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi475g00005 AP2 2.6e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi475g00005 - - mtr:11441685 292.737