Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi474g00004 ATGGCACTACCTTCTTGTGATTGGACTTATGATGTCTTTCTAAGCTTTAGAGGCATTGATACCCGAAACAACTTTACTGGTAATCTCTACAATTCTCTTCATCAAAGAGGTATAAACACTTTCTTTGATGAAGAAAAAATTGATAAAGGAGATGAAATCACACCTACTCTTCTCAAAGCCATTAAACACTCGAGAATTTTCATTGCTATTTTCTCCAAAGACTATGCATCTTCAACTTTCTGTTTGAATGAGCTTATCACCATTCTTGAGTGCGCCAAGCCACCTGAAAGGTTGTTTATTCCTATTTTTTATGATGTGGATCCTTCCCAGATTCGACACCTAACTGGAACTTATGGTGAAGCTTTCAAAAAACACGAAAAGAGGTTTAGAAATGAGAAGGATAAGGTGCAGAAATGGAGGGAAGCTTTGCATCAAGCTGCTAATGTTGCGGGATGCCATTTCATATCAGGGTCTGAATCAGAATATAAGTTTATTGGGAAGATAGTTGATGAAATCTCTATAAAAATCAACCGTGTTTATTTGCATGTTGCAAGTAAACCAGTTGGGTTGGAGTCTCAAATGTTAAAAGTTACAAATCTCCTTGAACTTGAACCTAATGAGAGAGTCAGCATGGTAGGCATATATGGAATTGGCGGAATTGGAAAATCAACACTTGCTCGTGCTGTGCATAACTTGGTTGCTGATCAATTTGAAGGTGTGTGTTATCTTGCTGACATAAGAGAGAGGGCAACTAATCACGATCTTGCAAAGCTCCAAGAAACACTACTTTCTGAAATACTCGGGGAGAAGGATATTAAAGTGGGAGATGTTTACAAAGGAATTTCAATGATTAAAAGGAGGCTCCAAAGAAAGAAAGTCCTTTTGATTCTTGACAATATTGACAAAGAAAAGCAGTTACAGGTACTTGTAGGAGGACATGATTGGTTTGGCTTCGGAAGCCAGATCATAATCACTACAAGAGACAAGCATTTGCTGGCCACTCATGGGATTGTGAAAATGTATGAGGTCCCACAGCTAAACAAAGAAAAGGCTCTTGAATTATTTAGTTGGCATGCATTTAAAAATAAAAAAACGGATCCAGGTTATGTGGATACTGCAAAACGTGCCGCATCTTATTGTCATGGTCTTCCCTTGGCTTTGGAGGTGATAGGTTCTCAATTGTTTGGAAAAAGTTTAGCTGTATGGAAATCCTCATTAGATAAATATGAAAGAGTCATTCATAAAGATATCCATGACATTCTGAAAGTTAGCTATGATGATTTGGAAGAAGATGTAAAGGGTATTTTTTTAGACATAGCCTGTTTCTTTAATTCTTATGAAATAGGCTACGTCAAAGAAATATTATACTTACACGGTTTTCATGCGGAAGATGGCATTGATGAGCTTATTGACAAATCCCTCGTGAAAATTGATAACAATGGCTGCGTGAGAATGCATGACTTGATTCAAGATATGGGCAGAAAAATTGTGAGGCAAGAACCAGCATTGGAGCCTGGAAGACGCAGTAGATTATGGTTTAGTGATGATATTGTTCATGTTTTAGAAGAAAACAAGGGAACCGATTCAATTGAAGTCATAATTGCTGACTTGCGCAAAGACAGAAAAGTGAAATGGTGTGGAAAAGCATTCGGACAAATGAAGAACTTGAAAATTCTTATAATTAGAAATGGACGGTTTTCCCAAGGTCCTCAAATTCTTCCAAATAGTTTGAAAGTGCTTGATTGGAGCGGATACGAATCATCCTCCTTACCTTCTGATTTTAATCCCAAGAATCTTGCAATGCCTAACCTGCCTGAAAGTTGCTTTAAACATTTTGATTCATTCAAGGTATTTGAGATGTTGAACTTTCTAGATTTTGAAGGCTGCAAATTTCTCATTGAAATACCTAGCTTATCTAGAGTACCAAATTTGGGGGCACTGTGTCTTGATTACTGCACTAATTTAAATAAAATCCATGAATCCGTTGGGTTTCTTGACAGACTTGTGTTATTAAGTGCTCAAGGATGCAATCAACTAGAAAGTTTGGTTCCCAAAATCAATTTGCCATCTCTAGAGACTTTAGATTTAAGGGGTTGCTCAAGTCTCGAGAGGTTCCCTGAAGTAGTTGGAGTAATGGAGAACATAGAAGAGGTTTATTTAGACCAGACTGCAATAAAACAGTTGCCTGTTACAATTGGAAAAATGGTTGGCCTCCAACGTTTGTTCTTGAGGGGATGCCGAAAGATGATTCAGCTGCCAAGCTACGTATTTCCCAAACTTGAGATAATAACTTCTTATGGTTGTAGGGGATTTCAAACATCTGAGAATGCAGAAAAAGTGAGTCCCAAAGTGTTTGCAAATGCCATGTGTGTTTATAATGAATATGGCAAGTCCATCCTTCATGTGTATTCTAGTAATAATGGCTCCAACGATGTCATAGAAGTATGTAATCCGTGGTGGAATTTCGATGGAATAAGTCTTGCATATCTTCTATTTAAACTCATTTGTTCGGGGTGTTTACAGGAGAAGTTACGTTTTAGTATTCTTAAAAGGAATGAATCATCTGTGTGTTTTCAGTTCCAAAAGAAATTTCCCCGGATAGCTCTATGGTGTTTGGTAGAACCTGGATATCATTTTGACAGCATGGTGTTGAGTTTCAAGCTGAATGTACTCATCAATGGCACTAAGCAACTCACTTCTTCATGTGAATACATATTTTACAAACAAAGAAAGACGGACCAAATGCTTTGTTGTGATCTAGTATGCAATGTGGAGGGTTTATTTTCAGAGAATGAGTGGAACCATGTGGAGATTTTATGTGAGATGGAACATCTCATGCCCAGTGCCCACCAGGGTTTGATCTCTAACAGGATTCTAAAGTGGTCTCTCCTATATGTGTTCCTAGAAAATGGAAATGACGATTTCGTCTTATTTCACAATCTTGGTTCCTCTTTGTTAAAAAAACAGAAAATAGAATTTTGGGAAGGTAAAAAAAATCAAGAGATTCGGAGAATAATGGAAAGAATAACATTATCTGGTTTTGGTTCCATGGGAAGGAGAAAACTCTTCAAAGGCAACCTCAAGGGATGTTCAATTACCGAGTTAGCAGAAAATTTTGACAAATTGAACAAATTGATGTTCAGCGTCATGAACCAATTTTGTGCAAGTACAGCCTCAGATAATAAAGATGATGCAGTGCAAAATCTTATCCTCGACGAGACTTATGAGGCTCAGGAAATTAAAGTACGCTATCATAGAGATTTGTGTTTGCCTTTATTATCAAATAAAACGGAGCTCAAAGAAGAGTATAGAAAAAGGAAGAGATTTTTATTACACGGTGGCGGCGGAACGAAAGGAGATTAG 3363 0.3744 MALPSCDWTYDVFLSFRGIDTRNNFTGNLYNSLHQRGINTFFDEEKIDKGDEITPTLLKAIKHSRIFIAIFSKDYASSTFCLNELITILECAKPPERLFIPIFYDVDPSQIRHLTGTYGEAFKKHEKRFRNEKDKVQKWREALHQAANVAGCHFISGSESEYKFIGKIVDEISIKINRVYLHVASKPVGLESQMLKVTNLLELEPNERVSMVGIYGIGGIGKSTLARAVHNLVADQFEGVCYLADIRERATNHDLAKLQETLLSEILGEKDIKVGDVYKGISMIKRRLQRKKVLLILDNIDKEKQLQVLVGGHDWFGFGSQIIITTRDKHLLATHGIVKMYEVPQLNKEKALELFSWHAFKNKKTDPGYVDTAKRAASYCHGLPLALEVIGSQLFGKSLAVWKSSLDKYERVIHKDIHDILKVSYDDLEEDVKGIFLDIACFFNSYEIGYVKEILYLHGFHAEDGIDELIDKSLVKIDNNGCVRMHDLIQDMGRKIVRQEPALEPGRRSRLWFSDDIVHVLEENKGTDSIEVIIADLRKDRKVKWCGKAFGQMKNLKILIIRNGRFSQGPQILPNSLKVLDWSGYESSSLPSDFNPKNLAMPNLPESCFKHFDSFKVFEMLNFLDFEGCKFLIEIPSLSRVPNLGALCLDYCTNLNKIHESVGFLDRLVLLSAQGCNQLESLVPKINLPSLETLDLRGCSSLERFPEVVGVMENIEEVYLDQTAIKQLPVTIGKMVGLQRLFLRGCRKMIQLPSYVFPKLEIITSYGCRGFQTSENAEKVSPKVFANAMCVYNEYGKSILHVYSSNNGSNDVIEVCNPWWNFDGISLAYLLFKLICSGCLQEKLRFSILKRNESSVCFQFQKKFPRIALWCLVEPGYHFDSMVLSFKLNVLINGTKQLTSSCEYIFYKQRKTDQMLCCDLVCNVEGLFSENEWNHVEILCEMEHLMPSAHQGLISNRILKWSLLYVFLENGNDDFVLFHNLGSSLLKKQKIEFWEGKKNQEIRRIMERITLSGFGSMGRRKLFKGNLKGCSITELAENFDKLNKLMFSVMNQFCASTASDNKDDAVQNLILDETYEAQEIKVRYHRDLCLPLLSNKTELKEEYRKRKRFLLHGGGGTKGD 1120
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi474g00004 1120 ProSiteProfiles TIR domain profile. 8 176 IPR000157 GO:0007165
Vivi474g00004 1120 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 755 IPR044974 GO:0006952
Vivi474g00004 1120 PRINTS Disease resistance protein signature 380 394 - -
Vivi474g00004 1120 PRINTS Disease resistance protein signature 287 301 - -
Vivi474g00004 1120 PRINTS Disease resistance protein signature 686 702 - -
Vivi474g00004 1120 PRINTS Disease resistance protein signature 211 226 - -
Vivi474g00004 1120 Gene3D - 6 176 IPR035897 -
Vivi474g00004 1120 Pfam TIR domain 10 175 IPR000157 GO:0007165
Vivi474g00004 1120 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 151 IPR035897 -
Vivi474g00004 1120 Gene3D - 177 339 IPR027417 -
Vivi474g00004 1120 SUPERFAMILY L domain-like 534 772 - -
Vivi474g00004 1120 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 439 IPR027417 -
Vivi474g00004 1120 Gene3D - 345 435 IPR042197 -
Vivi474g00004 1120 SUPERFAMILY "Winged helix" DNA-binding domain 416 522 IPR036390 -
Vivi474g00004 1120 Pfam NB-ARC domain 193 426 IPR002182 GO:0043531
Vivi474g00004 1120 Gene3D Ribonuclease Inhibitor 523 782 IPR032675 -
Vivi474g00004 1120 SMART till_3 9 149 IPR000157 GO:0007165
Vivi474g00004 1120 Coils Coil 122 142 - -
Vivi474g00004 1120 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 178 - -
Vivi474g00004 1120 SMART AAA_5 208 346 IPR003593 GO:0016887
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi474g00004 10 768 WRKY Transcription Factor Family AT4G12020 31.847 1.76e-88 312
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi474g00004 - - vvo:131631893 2253.4