Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi474g00003 ATGGCACTACCTTCTTGTGATTGGACTTATGATGTCTTTCTAAGCTTTAGAGGCATTGATACCCGAAACAACTTTACTGGTAATCTCTACAATTCTCTTCATCAAAGAGGTATAAACACTTTCTTTGATGAAGAAAAAATTGATAAAGGAGATGAAATCACACCTACTCTTCTCAAAGCCATTAAACACTCGAGAATTTTCATTGCTATTTTCTCCAAAGACTATGCATCTTCAACTTTCTGTTTGAATGAGCTTATCACCATTCTTGAGTGCGCCAAGCCACCTGAAAGGTTGTTTATTCCTATTTTTTATGATGTGGATCCTTCCCAGATTCGACACCTAACTGGAACTTATGGTGAAGCTTTCAAAAAACACGAAAAGAGGTTTAGAAATGAGAAGGATAAGGTGCAGAAATGGAGGGAAGCTTTGCATCAAGCTGCTAATGTTGCGGGATGCCATTTCATATCAGGGTCTGAATCAGAATATAAGTTTATTGGGAAGATAGTTGATGAAATCTCTATAAAAATCAACCGTGTTTATTTGCATGTTGCAAGTAAACCAGTTGGGTTGGAGTCTCAAATGTTAAAAGTTACAAATCTCCTTGAACTTGAACCTAATGAGAGAGTCAGCATGGTAGGCATATATGGAATTGGCGGAATTGGAAAATCAACACTTGCTCGTGCTGTGCATAACTTGGTTGCTGATCAATTTGAAGGTGTGTGTTATCTTGCTGACATAAGAGAGAGGGCAACTAATCACGATCTTGCAAAGCTCCAAGAAACACTACTTTCTGAAATACTCGGGGAGAAGGATATTAAAGTGGGAGATGTTTACAAAGGAATTTCAATGATTAAAAGGAGGCTCCAAAGAAAGAAAGTCCTTTTGATTCTTGACAATATTGACAAAGAAAAGCAGTTACAGGTACTTGTAGGAGGACATGATTGGTTTGGCTTCGGAAGCCAGATCATAATCACTACAAGAGACAAGCATTTGCTGGCCACTCATGGGATTGTGAAAATGTATGAGGTCCCACAGCTAAACAAAGAAAAGGCTCTTGAATTATTTAGTTGGCATGCATTTAAAAATAAAAAAACGGATCCAGGTTATGTGGATACTGCAAAACGTGCCGCATCTTATTGTCATGGTCTTCCCTTGGCTTTGGAGGTGATAGGTTCTCAATTGTTTGGAAAAAGTTTAGCTGTATGGAAATCCTCATTAGATAAATATGAAAGAGTCATTCATAAAGATATCCATGACATTCTGAAAGTTAGCTATGATGATTTGGAAGAAGATGTAAAGGGTATTTTTTTAGACATAGCCTGTTTCTTTAATTCTTATGAAATAGGCTACGTCAAAGAAATATTATACTTACACGGTTTTCATGCGGAAGATGGCATTGATGAGCTTATTGACAAATCCCTCGTGAAAATTGATAACAATGGCTGCGTGAGAATGCATGACTTGATTCAAGATATGGGCAGAAAAATTGTGAGGCAAGAACCAGCATTGGAGCCTGGAAGACGCAGTAGATTATGGTTTAGTGATGATATTGTTCATGTTTTAGAAGAAAACAAGGGAACCGATTCAATTGAAGTCATAATTGCTGACTTGCGCAAAGACAGAAAAGTGAAATGGTGTGGAAAAGCATTCGGACAAATGAAGAACTTGAAAATTCTTATAATTAGAAATGGACGGTTTTCCCAAGGTCCTCAAATTCTTCCAAATAGTTTGAAAGTGCTTGATTGGAGCGGATACGAATCATCCTCCTTACCTTCTGATTTTAATCCCAAGAATCTTGCAATGCCTAACCTGCCTGAAAGTTGCTTTAAACATTTTGATTCATTCAAGGTATTTGAGATGTTGAACTTTCTAGATTTTGAAGGCTGCAAATTTCTCATTGAAATACCTAGCTTATCTAGAGTACCAAATTTGGGGGCACTGTGTCTTGATTACTGCACTAATTTAAATAAAATCCATGAATCCGTTGGGTTTCTTGACAGACTTGTGTTATTAAGTGCTCAAGGATGCAATCAACTAGAAAGTTTGGTTCCCAAAATCAATTTGCCATCTCTAGAGACTTTAGATTTAAGGGGTTGCTCAAGTCTCGAGAGGTTCCCTGAAGTAGTTGGAGTAATGGAGAACATAGAAGAGGTTTATTTAGACCAGACTGCAATAAAACAGTTGCCTGTTACAATTGGAAAAATGGTTGGCCTCCAACGTTTGTTCTTGAGGGGATGCCGAAAGATGATTCAGCTGCCAAGCTACGTATTTCCCAAACTTGAGATAATAACTTCTTATGGTTGTAGGGGATTTCAAACATCTGAGAATGCAGAAAAAGTGAGTCCCAAAGTGTTTGCAAATGCCATGTGTGTTTATAATGAATATGGCAAGTCCATCCTTCATGTGTATTCTAGTAATAATGGCTCCAACGATGTCATAGAAGTATGTAATCCGTGGTGGAATTTCGATGGAATAAGTCTTGCATATCTTCTATTTAAACTCATTTGTTCGGGGTGTTTACAGGAGAAGTTACGTTTTAGTATTCTTAAAAGGAATGAATCATCTGTGTGTTTTCAGTTCCAAAAGAAATTTCCCCGGATAGCTCTATGGTGTTTGGTAGAACCTGGATATCATTTTGACAGCATGGTGTTGAGTTTCAAGCTGAATGTACTCATCAATGGCACTAAGCAACTCACTTCTTCATGTGAATACATATTTTACAAACAAAGAAAGACGGACCAAATGCTTTGTTGTGATCTAGTATGCAATGTGGAGGGTTTATTTTCAGAGAATGAGTGGAACCATGTGGAGATTTTATGTGAGATGGAACATCTCATGCCCAGTGCCCACCAGGGTTTGATCTCTAACAGGATTCTAAAGTGGTCTCTCCTATATGTGTTCCTAGAAAATGGAAATGACGATTTCGTCTTATTTCACAATCTTGGTTCCTCTTTGTTAAAAAAACAGAAAATAGAATTTTGGGAAGGTAAAAAAAATCAAGAGATTCGGAGAATAATGGAAAGAATAACATTATCTGGTTTTGGTTCCATGGGAAGGAGAAAACTCTTCAAAGGCAACCTCAAGGGATGTTCAATTACCGAGTTAGCAGAAAATTTTGACAAATTGAACAAATTGATGTTCAGCGTCATGAACCAATTTTGTGCAAGTACAGCCTCAGATAATAAAGATGATGCAGTGCAAAATCTTATCCTCGACGAGACTTATGAGGCTCAGGAAATTAAAGTACGCTATCATAGAGATTTGTGTTTGCCTTTATTATCAAATAAAACGGAGCTCAAAGAAGAGTATAGAAAAAGGAAGAGATTTTTATTACACGCTTCAACAATGACAACGGTTTCGAGTTCGACAACAACAGCTTCGACTTCGACAACCACTTCAACAGCTTCGACTTCGTCTTTGTTTACAGTTTCGGCTTTGAATTCAACAACATCTTCGACTTCGAAAATAACTACAATTTCATCTTTATTTACGGAGCTATTTAATGGTCAACATAAGAAAATCGATGCATTTTTCAAAAGGAAAATTTCCGATGAAAATGAAAATTGTATAGCTTCAACATCGACACTTCAGCACTGA 3597 0.372 MALPSCDWTYDVFLSFRGIDTRNNFTGNLYNSLHQRGINTFFDEEKIDKGDEITPTLLKAIKHSRIFIAIFSKDYASSTFCLNELITILECAKPPERLFIPIFYDVDPSQIRHLTGTYGEAFKKHEKRFRNEKDKVQKWREALHQAANVAGCHFISGSESEYKFIGKIVDEISIKINRVYLHVASKPVGLESQMLKVTNLLELEPNERVSMVGIYGIGGIGKSTLARAVHNLVADQFEGVCYLADIRERATNHDLAKLQETLLSEILGEKDIKVGDVYKGISMIKRRLQRKKVLLILDNIDKEKQLQVLVGGHDWFGFGSQIIITTRDKHLLATHGIVKMYEVPQLNKEKALELFSWHAFKNKKTDPGYVDTAKRAASYCHGLPLALEVIGSQLFGKSLAVWKSSLDKYERVIHKDIHDILKVSYDDLEEDVKGIFLDIACFFNSYEIGYVKEILYLHGFHAEDGIDELIDKSLVKIDNNGCVRMHDLIQDMGRKIVRQEPALEPGRRSRLWFSDDIVHVLEENKGTDSIEVIIADLRKDRKVKWCGKAFGQMKNLKILIIRNGRFSQGPQILPNSLKVLDWSGYESSSLPSDFNPKNLAMPNLPESCFKHFDSFKVFEMLNFLDFEGCKFLIEIPSLSRVPNLGALCLDYCTNLNKIHESVGFLDRLVLLSAQGCNQLESLVPKINLPSLETLDLRGCSSLERFPEVVGVMENIEEVYLDQTAIKQLPVTIGKMVGLQRLFLRGCRKMIQLPSYVFPKLEIITSYGCRGFQTSENAEKVSPKVFANAMCVYNEYGKSILHVYSSNNGSNDVIEVCNPWWNFDGISLAYLLFKLICSGCLQEKLRFSILKRNESSVCFQFQKKFPRIALWCLVEPGYHFDSMVLSFKLNVLINGTKQLTSSCEYIFYKQRKTDQMLCCDLVCNVEGLFSENEWNHVEILCEMEHLMPSAHQGLISNRILKWSLLYVFLENGNDDFVLFHNLGSSLLKKQKIEFWEGKKNQEIRRIMERITLSGFGSMGRRKLFKGNLKGCSITELAENFDKLNKLMFSVMNQFCASTASDNKDDAVQNLILDETYEAQEIKVRYHRDLCLPLLSNKTELKEEYRKRKRFLLHASTMTTVSSSTTTASTSTTTSTASTSSLFTVSALNSTTSSTSKITTISSLFTELFNGQHKKIDAFFKRKISDENENCIASTSTLQH 1198
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi474g00003 1198 ProSiteProfiles TIR domain profile. 8 176 IPR000157 GO:0007165
Vivi474g00003 1198 Gene3D - 177 339 IPR027417 -
Vivi474g00003 1198 Pfam TIR domain 10 175 IPR000157 GO:0007165
Vivi474g00003 1198 SUPERFAMILY "Winged helix" DNA-binding domain 416 522 IPR036390 -
Vivi474g00003 1198 SUPERFAMILY L domain-like 534 772 - -
Vivi474g00003 1198 PRINTS Disease resistance protein signature 211 226 - -
Vivi474g00003 1198 PRINTS Disease resistance protein signature 686 702 - -
Vivi474g00003 1198 PRINTS Disease resistance protein signature 380 394 - -
Vivi474g00003 1198 PRINTS Disease resistance protein signature 287 301 - -
Vivi474g00003 1198 Pfam NB-ARC domain 193 426 IPR002182 GO:0043531
Vivi474g00003 1198 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 439 IPR027417 -
Vivi474g00003 1198 Gene3D - 345 435 IPR042197 -
Vivi474g00003 1198 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 151 IPR035897 -
Vivi474g00003 1198 SMART till_3 9 149 IPR000157 GO:0007165
Vivi474g00003 1198 Gene3D - 6 176 IPR035897 -
Vivi474g00003 1198 Coils Coil 122 142 - -
Vivi474g00003 1198 FunFam Disease resistance protein (TIR-NBS-LRR class) 6 178 - -
Vivi474g00003 1198 SMART AAA_5 208 346 IPR003593 GO:0016887
Vivi474g00003 1198 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 764 IPR044974 GO:0006952
Vivi474g00003 1198 Gene3D Ribonuclease Inhibitor 523 782 IPR032675 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi474g00003 10 768 WRKY Transcription Factor Family AT4G12020 31.975 6.32e-88 312