Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi474g00001 ATGGCTGCAAAGAGACATCTTAGCTATGAGTTGGAAGATGGTTCTCGGAGGAAGTTTGATCCAAAACCTTGGAGGCTACCAAGAGGTATTATGACATCTATTAGCGATAGCAAGTATTATTTCTTTAAAATTAAAAATAGTAGATTTGAAAATAAGGATACAAGACTAGCAGGAAACGGGGAATGGAAGAGCATGGAAAAGAACAAGGAAATTTCTCTACCAAACAATATGTTCACTGGGATAAAAAACACACTCGAATTCTGGAAAATGCAAGGAGGGGAACTTGTAAAAACTGAATGGCTAATGAATGAATTCCGCATTACTTCAAGTGCTCACCCGACCGAGGTTTCAGCTTTTGCAGCATATCGCATCATGTTGGAACGAACCTTGGAAGCTACAAAGAGATTTAAAAATAAGGATACAAGACCAGATGGAAACGGGGAATGGAAGAGCATGGAAAAGAACAAGGAAATTTCTCTACCAAACAAAATGTTCACTGGGATAAAAAACACACTCGAATTTTGGAAAATGCAAGGAGGGAAACTTGTGAAAACTGAATGGCTAATGAGTGAATTCCCCATTACTTCAAGTGCTCACCCGACCGAGGTTTCAGCTTTTGCAGCATATCGCATCACTAAGACTGTTCTACCAAGTGTATTTGATATTACAATGGAGGATGGATGTTCCTCTCCTCCACCCTCTTCATGA 708 0.3955 MAAKRHLSYELEDGSRRKFDPKPWRLPRGIMTSISDSKYYFFKIKNSRFENKDTRLAGNGEWKSMEKNKEISLPNNMFTGIKNTLEFWKMQGGELVKTEWLMNEFRITSSAHPTEVSAFAAYRIMLERTLEATKRFKNKDTRPDGNGEWKSMEKNKEISLPNKMFTGIKNTLEFWKMQGGKLVKTEWLMSEFPITSSAHPTEVSAFAAYRITKTVLPSVFDITMEDGCSSPPPSS 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi474g00001 235 Gene3D NAC domain 16 128 IPR036093 GO:0003677|GO:0006355
Vivi474g00001 235 SUPERFAMILY NAC domain 139 212 IPR036093 GO:0003677|GO:0006355
Vivi474g00001 235 PANTHER NAC TRANSCRIPTION FACTOR 56 22 125 - -
Vivi474g00001 235 Pfam No apical meristem (NAM) protein 134 192 IPR003441 GO:0003677|GO:0006355
Vivi474g00001 235 Pfam No apical meristem (NAM) protein 22 107 IPR003441 GO:0003677|GO:0006355
Vivi474g00001 235 SUPERFAMILY NAC domain 20 125 IPR036093 GO:0003677|GO:0006355
Vivi474g00001 235 ProSiteProfiles NAC domain profile. 1 127 IPR003441 GO:0003677|GO:0006355
Vivi474g00001 235 Gene3D NAC domain 129 224 IPR036093 GO:0003677|GO:0006355
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi474g00001 18 109 NAC Transcription Factor Family AT5G39820 31.579 4.08e-10 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi474g00001 NAM 9.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi474g00001 - - vvo:131631907 484.952