Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi470g00009 ATGTCCATGACACCAACTAATCGTTATTCACTACCTTCTCCTCCTATGCCTTTTGATCTTAGTAACAATGAAGATCATAACCACCATCTCTTCAATACAAACATTCATCAACCCTCCTCTTCATCTTCTTGCCTATCATATTCCACACTTTTCAACCAAAATCAAGATCAAGGTCGCTCCTATTCTTCTGAACCAAATCACATACAAAGTGATCTAAAGGTTGTGAAGTTGGTTCCTTCCAGTGGATCATGTGATCATCAAGAACTAGAGAAAGAAAATAGAAATGGAGCGTTTGAACCAGAGGATAATAGTTCAATGAAGTGGATGCCATCAAAGAAGAGAATAATTAAGAGAATGATGGAAGATCAAAGGGTTTCCGAGCATAATTTTGAAAAAGAAAAAGTATTATCGCGTGTAGAAACCGATAATAGTAGCAACAACATTGGCTCAAACAACAACAATATGATTGTTAGGGTTTGTAGTGATTGCCACACAACTAAGACCCCTCTCTGGAGAAGTGGACCAGCAGGTCCTAAGTCTCTCTGCAATGCATGCGGGATTCGACAAAGGAAAGCGCGGCGCGCACTCGCAGCAACTGCATCTGCAAATGGTGAGAATCACGTGGCTGCTGAGAAGCCCTATGTGAAAGGAAAGAAGTTGCAAATCAAAAGGAAAATGTCAAAAACTGATGAATGTGCACCACCACATTTGAAAAGGAAGGGTAAAATTGGAAAAAGTTCAACTAGTTTTGAAGATTTGATAACAAGTTTGAGTAACAACTTTGCTTCTCATCAAGTTTTCCCTCAAGATGAGAAAGAGGCTGCTATTCTACTCATGGCTTTGTCTTATGGATTACTTCATGAATTTGATTCCTTGTAA 879 0.3914 MSMTPTNRYSLPSPPMPFDLSNNEDHNHHLFNTNIHQPSSSSSCLSYSTLFNQNQDQGRSYSSEPNHIQSDLKVVKLVPSSGSCDHQELEKENRNGAFEPEDNSSMKWMPSKKRIIKRMMEDQRVSEHNFEKEKVLSRVETDNSSNNIGSNNNNMIVRVCSDCHTTKTPLWRSGPAGPKSLCNACGIRQRKARRALAATASANGENHVAAEKPYVKGKKLQIKRKMSKTDECAPPHLKRKGKIGKSSTSFEDLITSLSNNFASHQVFPQDEKEAAILLMALSYGLLHEFDSL 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi470g00009 292 CDD ZnF_GATA 159 225 IPR000679 GO:0006355|GO:0043565
Vivi470g00009 292 Gene3D - 156 242 IPR013088 GO:0006355|GO:0008270
Vivi470g00009 292 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 157 194 - -
Vivi470g00009 292 Pfam GATA zinc finger 160 193 IPR000679 GO:0006355|GO:0043565
Vivi470g00009 292 ProSiteProfiles GATA-type zinc finger domain profile. 158 190 IPR000679 GO:0006355|GO:0043565
Vivi470g00009 292 FunFam GATA transcription factor 21 154 233 - -
Vivi470g00009 292 MobiDBLite consensus disorder prediction 84 106 - -
Vivi470g00009 292 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 3 288 - -
Vivi470g00009 292 SMART GATA_3 154 206 IPR000679 GO:0006355|GO:0043565
Vivi470g00009 292 ProSitePatterns GATA-type zinc finger domain. 160 185 IPR000679 GO:0006355|GO:0043565
Vivi470g00009 292 MobiDBLite consensus disorder prediction 1 24 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi470g00009 105 287 C2C2-Gata Transcription Factor Family AT4G26150 41.395 5.37e-32 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi470g00009 GATA 3.7e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi470g00009 - - psat:127136613 477.248