Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi470g00008 ATGGCATTTGGCTTGCTGTGTTCCGCGAAAATCATGCACTACTTATGTGGAGGAAAACTCAATAGAGAGCTCGTGAGCAAGTTTACCAAATCAGTGAGTTACATCGTTGCCTTTGTTGATGATGCCGAACAGAGGCAGATCAGAAACCCTCATGCAGAAGCATGGCTTGATGATGTCAAAGATGTTATGCTTGACGCGGAGGATCTCTTGGATGAAATTAACATTCATGTTTTGCAGTGCAAGTTTGAAGCTGAATCCCAAATCCGTGTTACTAGACCTAGTAAGTTGTGGACTCTCTTCAGTGCTTCTTCTAGTTCAATTGACAAGAAAATTGAATCTAGAATGCAAGAAATTGTTGATAACCTAGAATGCCTTGTAAACAAAAAGGATTTACTTCTTTTGAAAGAGCATACTATTGGTTTTGGTGCTGCATCACAAAAGCTGCCTTCGACATGTTTGCCTCTTGAATCGTTTATATATGGTAGAGATGGTGACAAAGATATTATATTTGATTGGCTCGTATCCGACACTGAGATGCTTTCAATAATTTCACTTGTTGGTATGGGAGGGATGGGTAAAACCACCATTGCCCAACATTTATACAATGACCCGAAGACGAAGGGAATTTTTGATCTTTCAGCTTGGGTATATGTCTCAGAAAAATTTGACATTTGTAGAATAACAAGAGAAATCCTCAAAGAAGTCACTAATTCAACTTATGATGATAGTTTACAATTGAACATACTTCAAGAAAATTTGGTGGAAAAACTAATCGGGAAGAGATTTCTTCTTGTTTTAGATGACAATTGGAATGAGAACTATATGTTGTGGGAAGCTTTGCAGGCTCCTTTTGGTTTTTGGGCTCGGGGAAGCAAAATTCTTGTCACTACACGTAGTAAGAAAGTCGCTTTAGTCATGAATTCAAATAAATTGCACCAGCTTGAGCAATTAGAAGAAGAACATAGCTGGAAATTGTTTTCTAAACATGCATTCCAAGATAAAAATGATTCTCAGATAAATCCTAAGTTTGAGAAGATTGGTAAGAAGGTAACGAACAAATGTCAAGGATTGCCTCTAGCTTTGGAAGCAATTGGAGGTCTCTTGAATACAAAGTCATCCTTATTGGAATGGAAGAAGATATTGTCAAGCGAGATATGGGACTTAAATATAGAGACTAAAATCATCCCTACTTTGATATTGAGCTATCAAAACCTTCCTTATCATCTCAAGAGATGTTTTGCCTACTGTGCCTTATTCCCAAAAGGTTATTTGTTTGAAAAGGGTGATTTAAGTTTATTATGGATGGCTCAAAATTTTCTACAATACCCTGAACAAAAGGTTGAGAGTCGGAGAGAAGTTGGTGAAAGGTATTTCAACGATCTACTACTAAGATCATTTTTTAAACCGTCAAAAAAGTACAAAAATGTTTTTGTAATGCACAACATTCTCCATGATTTAGCAAAATATGTATATGGAAAATTTTGCTTCACGTTGAAAGTTAAAGATGCCCAAAGTATACCAAAACTGACTCGCCATTTTTCATTTTTATGTGATGAACTTGAATCTTTTGATGGATTCGAGATATTACACCATGCTAATAGATTACACACATTTCTACCATTATCTATGGATTCCTATCAACATCGATGGTGGTTGCGTTTGAAGTCTGACACTATGATGTTACCTGAGTTGTTTTCTAAGCTCAAGTTATTACGTGTCTTGTCTTTATATGCTTATTGGGATATGACTGAGTTGCCGGATACAATAGGCGATCTTAAACATCTACAATACCTCGATCTTTCTCGGACTAGAATCAGAAACCTTCCCGATTCTTTATGTTCTCTCTATAATCTTCAACTATTGAAATTGAGGGACTGTGAATATTTTGAAGAGTTACCCGTGAATTTATATAAGCTCGTGAACTTGTGCTATTTGGATTTTAGTGGAACGAAAGTTAGAAAAATGCCAAAAGAAATGGAAAAGTTGAAGAATCTCGAAGAATTGAGTTCTTTTTATGTGGACAAGGATAGCGAGTCCAATATCCAACAATTAGGAGAATTCAATCTGCACGGAGAACTATCTATTTTAGAGATTCAAAACATTGCGAATCCCCGGTATGCATTTTTGGCAAATTTGAAAAATAAAGTATACCTTGTGAAACTAGAGTTAACATGGAATGAAAATAGTGATAATTCGCAGAAAGAAAGGGAAGTGCTCGAGAAGCTACAACCTTCTAAACGCTTGAAGAAGTTGTTAATCAATAACTATGGCGGTACATTTTTTCCATATTGGTTTGGAGACAATTCATTGTCATATGTTGTATCCTTAAAGTTGAGTAATTGTAGAAACTGTATTTTGATTCCTTCACTTGGAGCTATGTCATCGCTCAAACACCTCCAGATTAAAGGGTTATCTGCCATAGTGGTGATTGGTAGGGAATTTTATGGAAATGGGACTATTCCATTTCCATCATTGGAAACCTTAACTTTTAAAGATATGAGTGGATGGGAAAAATGGGAATATGAAGTCGAAAGGGATGCTTTTCCGCGTCTACAAAAACTTTCTCTAGTGCAATGTCCCAATCTAAAAGACAAATTGCCTGAAAATCTTCCTTGTTTAGTAAATTTAGAAATTCTTGATTGCAAACACCTCTTGGCTTCTGTTCCGTTCTCTCCGGTCATTCGTGAATTATGTCTCACTTATTGCAGAAAGTTGCAATTTGAATATCATTCATCTACTATGAAGCTTCTTGTGATTAGTCGATGTTGCACAGATGAATCCTCCGTGGAATGGACCGGAAATATCTTGTCTCATTGTTCTACCTCTATTAGAACGTTGAAAATTGAAGATTGCCCAACTATGAATATTCCCCTAGGTAGCTGCTACAATTTCCTTGTAAAACTTGACATCACAAGTAGTTGTGACTCTCTAAAGACGTTCCCATTGGATCTATTTCCAAAACTTGATTCTCTTGACATTTATAAGTGCTATAACTTTGAAATGATTTCACAGGAGCGTGAACATCTTCTACTTACATCTTTATTAATTGAAGAGTGTCCTAAATTTGCATCATTTCCCAAAGGAGGATTGGCTGCACCTAAGCTACAGTATTTGCTAATTTCCAAATTGGAGAATTTAAAATCATTGCCTGAAGGCATGCATATCCTGCTTCCATCTCTTTATAAGCTGTCTATAGAGGATTGTCCACAACTGAATTCTTTCTCAAATGGTGGTTTTCCATCAAGCCTAAGAAGCCTCTTTCTCATGAAATGCTCCAAACTTCTCATCGACTCGCTGAAACTCGCATTCCCAACCAACACCTCTATGTGTGACATGTATATTCAAGAAGTGGATATGGAGTCCTTTCCCAATGAAGGGTTACTTCCCCTCTCACTTACTCGTATAACTATCACGTATTGTCGAAACCTCAGACAACTTGACTACAAGGGTATTGACCACCTCCCCTCTCTTACAACATTGATTCTTAATAACTGTCCCAACATCCAATGCTTGCCAGAGGAGGGTCTGCCTAAATCCATTACAACTCTACAAATTCGGGGAAATTGTCCATTGCTCAAATTGCGATGTAAGAAACCAAATGGCGAAGATTGGCAGAAGATTTCACACATTGAATGTGTAATCATTGATAATTAA 3654 0.3684 MAFGLLCSAKIMHYLCGGKLNRELVSKFTKSVSYIVAFVDDAEQRQIRNPHAEAWLDDVKDVMLDAEDLLDEINIHVLQCKFEAESQIRVTRPSKLWTLFSASSSSIDKKIESRMQEIVDNLECLVNKKDLLLLKEHTIGFGAASQKLPSTCLPLESFIYGRDGDKDIIFDWLVSDTEMLSIISLVGMGGMGKTTIAQHLYNDPKTKGIFDLSAWVYVSEKFDICRITREILKEVTNSTYDDSLQLNILQENLVEKLIGKRFLLVLDDNWNENYMLWEALQAPFGFWARGSKILVTTRSKKVALVMNSNKLHQLEQLEEEHSWKLFSKHAFQDKNDSQINPKFEKIGKKVTNKCQGLPLALEAIGGLLNTKSSLLEWKKILSSEIWDLNIETKIIPTLILSYQNLPYHLKRCFAYCALFPKGYLFEKGDLSLLWMAQNFLQYPEQKVESRREVGERYFNDLLLRSFFKPSKKYKNVFVMHNILHDLAKYVYGKFCFTLKVKDAQSIPKLTRHFSFLCDELESFDGFEILHHANRLHTFLPLSMDSYQHRWWLRLKSDTMMLPELFSKLKLLRVLSLYAYWDMTELPDTIGDLKHLQYLDLSRTRIRNLPDSLCSLYNLQLLKLRDCEYFEELPVNLYKLVNLCYLDFSGTKVRKMPKEMEKLKNLEELSSFYVDKDSESNIQQLGEFNLHGELSILEIQNIANPRYAFLANLKNKVYLVKLELTWNENSDNSQKEREVLEKLQPSKRLKKLLINNYGGTFFPYWFGDNSLSYVVSLKLSNCRNCILIPSLGAMSSLKHLQIKGLSAIVVIGREFYGNGTIPFPSLETLTFKDMSGWEKWEYEVERDAFPRLQKLSLVQCPNLKDKLPENLPCLVNLEILDCKHLLASVPFSPVIRELCLTYCRKLQFEYHSSTMKLLVISRCCTDESSVEWTGNILSHCSTSIRTLKIEDCPTMNIPLGSCYNFLVKLDITSSCDSLKTFPLDLFPKLDSLDIYKCYNFEMISQEREHLLLTSLLIEECPKFASFPKGGLAAPKLQYLLISKLENLKSLPEGMHILLPSLYKLSIEDCPQLNSFSNGGFPSSLRSLFLMKCSKLLIDSLKLAFPTNTSMCDMYIQEVDMESFPNEGLLPLSLTRITITYCRNLRQLDYKGIDHLPSLTTLILNNCPNIQCLPEEGLPKSITTLQIRGNCPLLKLRCKKPNGEDWQKISHIECVIIDN 1217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi470g00008 1217 Gene3D - 19 116 - -
Vivi470g00008 1217 Pfam NB-ARC domain 165 382 IPR002182 GO:0043531
Vivi470g00008 1217 Gene3D Ribonuclease Inhibitor 548 922 IPR032675 -
Vivi470g00008 1217 Gene3D - 402 489 IPR036388 -
Vivi470g00008 1217 FunFam Probable disease resistance protein At5g66910 316 401 - -
Vivi470g00008 1217 Gene3D Ribonuclease Inhibitor 994 1197 IPR032675 -
Vivi470g00008 1217 SUPERFAMILY L domain-like 478 907 - -
Vivi470g00008 1217 PANTHER DISEASE RESISTANCE PROTEIN RP 54 843 IPR044974 GO:0006952
Vivi470g00008 1217 Gene3D - 144 313 IPR027417 -
Vivi470g00008 1217 Pfam Rx N-terminal domain 23 87 IPR041118 -
Vivi470g00008 1217 FunFam Probable disease resistance protein At1g61300 145 311 - -
Vivi470g00008 1217 SMART LRR_typ_2 592 615 IPR003591 -
Vivi470g00008 1217 SMART LRR_typ_2 639 662 IPR003591 -
Vivi470g00008 1217 SMART LRR_typ_2 1154 1178 IPR003591 -
Vivi470g00008 1217 ProSiteProfiles Leucine-rich repeat profile. 594 615 IPR001611 GO:0005515
Vivi470g00008 1217 PRINTS Disease resistance protein signature 256 270 - -
Vivi470g00008 1217 PRINTS Disease resistance protein signature 354 368 - -
Vivi470g00008 1217 PRINTS Disease resistance protein signature 182 197 - -
Vivi470g00008 1217 PRINTS Disease resistance protein signature 590 606 - -
Vivi470g00008 1217 SUPERFAMILY L domain-like 937 1208 - -
Vivi470g00008 1217 Gene3D - 316 401 IPR042197 -
Vivi470g00008 1217 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 416 IPR027417 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi470g00008 183 365 WRKY Transcription Factor Family AT5G45050 27.128 5.03e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi470g00008 - - mtr:11441594 1457.58