Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi469g00005 ATGGATACTCCACCAACACCAAACCACACTTCCTCACATAATAACCTTCCCATTACCGTAACCGTTTTCGCCGTTACCGTTATCGTTTTCTTAACGATCTATTTCATCTTCCGTTACCGCCGCAATAGCGCCTCCCGTCGTTTAACTCCGCCGTCGTCGTCTTCCACAGTTTTATCATCCGGCAATAGAATAACGCCGGAGACGACTTCGTCTTCTTCCTCCGTAGTCGATTCTCTCCCGCTTTTCACGTTCTCTTCCATCAAACGCCGTTCCTCCTCCGTTGTCTCCGGCGACTGCGCTGTTTGTTTGTCGAGGTTTGAGCAAAATGATTACCTCCGTCTTCTTCCTCTCTGTTGCCACGCATTCCACGCGGAATGCGTTGACGTTTGGCTCCAGTCGAACCTGACGTGTCCGCTCTGTCGATCAGCCGTTATCGCTTCGGAATCGGAGGTTGTGAAGATTTCCCGGCCGGCATCGTCGTCATCTGATAACAGCTTCCGTTTGGAGTTAGGTAACGTCAGCAACCGCCGTGGCGCTACCGCATCTGAGAATGTCAGCGGAGAAACTGACCGGAGATCATACTCCGTCGGCGCATTTGAGTATTTCGTCGATGAAGAAGCTGAGATTCCGTTCGGTCATACTAATCGAAGAATTGTTCCCGGTGAGAAAGATGATGCACCGGCAATCCCGGCGGGGGAGTTTCCGGTTCCGGTGGCTTCTCACTTGGTCGGTGAAGGTAACAACTGGCTGAAGGATTACATGGATAATATCTCAAGTCTGACGTGGTTTAGAAATTCTGGAAGGTTCTTCAATGGGAGTAGTCGACGAAACGACGTCGTTGGAGTTCAGGATTTTGATGTTGAAGCTAACAGGTTTGGGGAAGAAATTAGTGAGATGTTTAGATGGGTTTCAGGGGTTTGA 921 0.4995 MDTPPTPNHTSSHNNLPITVTVFAVTVIVFLTIYFIFRYRRNSASRRLTPPSSSSTVLSSGNRITPETTSSSSSVVDSLPLFTFSSIKRRSSSVVSGDCAVCLSRFEQNDYLRLLPLCCHAFHAECVDVWLQSNLTCPLCRSAVIASESEVVKISRPASSSSDNSFRLELGNVSNRRGATASENVSGETDRRSYSVGAFEYFVDEEAEIPFGHTNRRIVPGEKDDAPAIPAGEFPVPVASHLVGEGNNWLKDYMDNISSLTWFRNSGRFFNGSSRRNDVVGVQDFDVEANRFGEEISEMFRWVSGV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi469g00005 306 MobiDBLite consensus disorder prediction 45 71 - -
Vivi469g00005 306 CDD RING-H2_EL5-like 98 141 - -
Vivi469g00005 306 Pfam Ring finger domain 98 141 IPR001841 -
Vivi469g00005 306 FunFam E3 ubiquitin-protein ligase ATL6 62 147 - -
Vivi469g00005 306 SUPERFAMILY RING/U-box 75 146 - -
Vivi469g00005 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 18 209 - -
Vivi469g00005 306 SMART ring_2 99 140 IPR001841 -
Vivi469g00005 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 146 IPR013083 -
Vivi469g00005 306 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi469g00005 1 141 C3H Transcription Factor Family AT2G34990 34.752 1.33e-22 94.0