Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi467g00034 ATGTCCCATACGTCCTCCTGCCTGCAGAAATTTCAGAAGTGTGAATATGCAAAAACGAAGTTATTTAAAACTGAAGGCCGAGGGTGGGGTCTTTTGGCTGATGAGGACATTAAGGCAGGACAGTTTGTCATTGAATACTGTGGAGAAGTAATATCATGGAAAGAAGCCAAACGCAGATCCCATACATATGAAACTCAAGGTCCTACAGATGCATATATCATTTCTCTTAATGCGTCTGAATCCATCGATGCAACTAGAAAGGGAAGCATTGCCAGATTTATTAATCATTCCTGTCAACCAAATTGTGAGACAAGAAAATGGACTGTCATGGGGGAAATAAGAGTTGGAATATTTGCAAGGCAAGATATTCCTATTGGAACTGAATTGGCATATGACTATAATTTTGAATGGTTTGGAGGTGCAAAGGTTCGCTGCCTCTGTGGTGCGCCCAAATGTTCCGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAAGAGGATACTTATCTATGGGAAGATGATGATGACAGATACTCAATAGAGAAAATTCCTTTATATGACTCTGCGGAGGATGAACCGATGTCAAATGCTGATGGACAAAGTGAACAATCCATGGATATTATAGTTAAAGTTGAGGAACTATCAGAGTCCACTGCTTTTAATGTTCAACCAGTCGATTCAGTTGAGATCAAGGATTTAGGTGATTCAGTTGAAATCAAGGATTTAAGTATTCAAAAAATTAAAACTGAAATAGTAAGTGAGGACATGAAGTTGTACTCCCAAGATACCGAACACAACCTTCCACAAAAGAATGCAATGATATCGCGCATTCGAAGTAACACTGCAGGACGAAACTATCGCATTGGACCTAGGTCCATCTCTTCCAAAAGATCAAAGGCACAGAATGGGGGAAAGTTTAAAAATCGCATACAGAAGAAAATTGATGCAAAGTATGCAGCTGGCCTTTTGGCATCAAAAGAAGCACAAGATGAGATCTTAGATTATGAGAAAAGAAAAGATGAAGCCACAGAGGCTCTTGATTCTCTATACAATGAAATAAGGCCTGCCATTGAAGAACACGAGAGGGATACCCAAGACAGTGTATCCACAACAGTAGCTGAGAAATGGATTCAGGCATGCTGTCTAAAACTAAAGGCCGAGTTTGATCTTTACTCTTCAATTGTTAAAAATGTTGCTTGTACTGCTCCAAAGTCACCTGGCCAAGCAAAAACCACCGAAGTAGATATCGAAAACAAAATCAAGCTTTTGACTGATTGA 1275 0.3969 MSHTSSCLQKFQKCEYAKTKLFKTEGRGWGLLADEDIKAGQFVIEYCGEVISWKEAKRRSHTYETQGPTDAYIISLNASESIDATRKGSIARFINHSCQPNCETRKWTVMGEIRVGIFARQDIPIGTELAYDYNFEWFGGAKVRCLCGAPKCSGFLGAKSRGFQEDTYLWEDDDDRYSIEKIPLYDSAEDEPMSNADGQSEQSMDIIVKVEELSESTAFNVQPVDSVEIKDLGDSVEIKDLSIQKIKTEIVSEDMKLYSQDTEHNLPQKNAMISRIRSNTAGRNYRIGPRSISSKRSKAQNGGKFKNRIQKKIDAKYAAGLLASKEAQDEILDYEKRKDEATEALDSLYNEIRPAIEEHERDTQDSVSTTVAEKWIQACCLKLKAEFDLYSSIVKNVACTAPKSPGQAKTTEVDIENKIKLLTD 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi467g00034 424 Pfam SET domain 28 134 IPR001214 GO:0005515
Vivi467g00034 424 Gene3D SET domain 2 169 IPR046341 -
Vivi467g00034 424 MobiDBLite consensus disorder prediction 284 304 - -
Vivi467g00034 424 SMART PostSET_3 141 157 IPR003616 -
Vivi467g00034 424 MobiDBLite consensus disorder prediction 284 305 - -
Vivi467g00034 424 SMART set_7 17 140 IPR001214 GO:0005515
Vivi467g00034 424 ProSiteProfiles SET domain profile. 17 134 IPR001214 GO:0005515
Vivi467g00034 424 ProSiteProfiles Post-SET domain profile. 141 157 IPR003616 -
Vivi467g00034 424 SUPERFAMILY SET domain 6 154 IPR046341 -
Vivi467g00034 424 PANTHER SET DOMAIN PROTEINS 9 405 - -
Vivi467g00034 424 Coils Coil 324 351 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi467g00034 17 156 C2H2 Transcription Factor Family AT2G23740 36.646 7.99e-20 90.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vivi467g00034 SET 2.9e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi467g00034 - - gmx:100804657 675.626