Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi466g00002 ATGGTGAAAAAATCAACAAAGGAGGAGGTGAAACAAGAATTACCGCCGGACGATCTCCGGTGCAGCCGCACCGACGGCCGGCAATGGCGGTGCAAACGGAGAGCGATGGAAAACGTGAAGCTATGCGAGGTTCACTATCTGCAAGGCCGGCATCGTCAGAACAAAGAGAGGGTACCGGAGTCACTGAAACTTTCGAAGGACGTGAAGGTGAAGAAGAAGAAGAAGAAGAAAAACGACGTCGTTGAAATTAGGTCAAAGAAGAACAAGAAGAAGAAGAGGAAACATGTTGATGTGCAATTGGAGTTGATAAGGATGGTGTTGGAGAGAGAGGTTGATAAGAAGAAGAATGTGAAGAGGAATAATAATGAGGAAATTGAATTGCATTACAGTGAGGGTGAATTGAGGAAGGAATTGCCTAATGGGGTTATGGAAATTGCTCCTGTTTCGACACCGTGTGATGTGGAGTTTCAGAGTAATGGTAAAACTTTTATCGCGCCGCGTTACTTCAGGTCCAAGAATGTTGATAAGAGAGTCCCTTTTGATAATTTGCAGGTTTTGAAGAAGTGTGGGGGGAAGAAGTGTCATTGTTGCCAGAGTAGTGATTCTGGGAATCTTATAAAGTGTTCCAACTGCCAGAAGGAGTTTTTCTGCCTGGATTGCATTAAACGAAGGTATTCCGAGACTCCTAATGAGGTTAAGACGGCGTGTCCAGTTTGTCGAGGAACTTGTACTTGTAAATATTGTCGGGCAGGTCTTTGTAAAGACAATGAAAGTAAGGACCATTTGGCTGGCAGAAATAGTGTTCATAGGATATTGCATTTTCATTATTTGATCTGTATGCTCCTTCCTGTACTAAAACAAATAAGTGAGGAGCAGCGTACCGAGCTAGAAACAGAAGCGAAAAATAAAGGGAAAAATATTTCTGATATTCTCATCAAGCAAGTCGAATTTGGCCGCAATGAGAAAAATAACTGCAATTACTGCCACTCGTCGATTCTAAATCTTCACAGAAGCTGTCTGAGTTGTTCCTACAGTCTTTGTTTAAGATGTTGCCAGGCATTAAGTCAGGGGAGCCCTTTTGAGCATATAAATTCTTTGGTGACCGAGATACCTGATAAAATGGACGTTTGCATTGATAATGAAAGTTACCCTTCGGATGATAATACCATTTCTAGCGACGATGTAACTGATACTTCACTGTTATCTGATTGGACTGGTTGTAATGGCACTACCGACAGTGTATCATGTCCTCCTTCAGAGCTGGGTGGTTGTGGTAATACCCACCTTGACTTGAGATGTGTTTTTCCTTTAAGTTGGATAGAAGAAATGGAAACGAAGGCAGAAGAAGTAGTTTGCAGCTATGAAGTTCCTGAAATTTTGGATAAAAATTCAAGTTGTTCACTTTGTAGTGACAAAGATCATAAAACTAACAGGCATAAGCAATCACAAGAAGCGGCTCGAAGAGAAGATTCTAATGATAATTGCTTATTTTATCCTACAGCTTTCGCCATCAGTTCAGATCATTGCGAACACTTCCAGAAACACTGGGGAAAAGGCCATCCTGTAGTAGTCCGAAATGTGCTCCGAAGTAGAAAAAACCTCAGTTGGGATCCTTTGGTCATGTTCTGTGATTATCTTGAGGAGAGCATTTCAAGATACGAGAATAATAAGGACTTACTTGAAGCTTGTTTGGATTGGTGTGAGGTGGAAATTAACATTAAACAGCATTTTACTGGATCTCTTAGATGTCGACCTCAGAAAAATGATTTCCATGAGATGCTGAAATTAAATGGATGGTTATCTTCCCAGCTATTCAAAAAACAGTTTCCAGATCATTTTGCTCAAGTAATTGATGCTCTTCCACTTCAAGAATACATGAATCCCATGTCCGGTCTTCTGAATTTAGCGGCATATATGCCAGATGGGAGTGCAAAACATGACAAAGGCCCATATGTCCATATTTCTTATGGCTGTGCTGACAAGGAAGCTTGTTCTGTGCTAAATATCTCTTATGAGCCATATGATGTGGTTGATATCATGGCATATACCACAGATGCTCCTCTCTCACCAGACCATCTTGCTAATGTAACTAAGCTATTGAAAAAGCATCAAACTCTGTGTCAAAGGGGGTCGCCAATGAATACTTCCGAACACGTAGAAGACAAGGAACAAAAAGAAACAGAGAGTATTGCCATGGAAGGAACCGACTTTTACAGGAGAGTCAATAGAACATCTAGCATTAATGAAGTCAAAACAATGCCTAGTCAGAGTTTAGAGGAAAATGCTTCCATCAATGAAGAATGTGTTTCTGGTTCAGATTCAGATTCAGATTCAGATTCCGAGAAAACACAAAGCTCTTTACCTCTCCGCAAGACAGTTCGAAGCACTGAAATGTATTCTGTTGCTCAGTGGGATGTCTTCCGAAGACAGGATGAACCAAAGCTTCTAGAATATCTCAAAAGACATGCTGATGAATTTTCTTGTGCCAGTGAACATCACGGCAAGAAGATGGTTCAGCCAATTCTAGATCAGAGCATCTTTCTGGACACTACTCACAAAATGAGACTGAAGGAGGAATTCAATATCGAACCGTGGACCTTTGAGCAACATGTTGGAGAAGCTGTTATCGTTCCCGCCGGATGTCCATACCAGATTAGGAATTCTAAGTGTTGTGTTCATGTGGTATTGGAATTTATGTCTCCTGAGAATGTTGCGGAATGTATCCAATTGACCGATGAGATTCATTTGCTTCCTGAAGACCATATTGCAAAAGTAGACATGCTGGAGGCGAGGAAAATGGCTCTTAATAGTGTGGAGACGGCGATAAAAGAAATACATGAGCTTACTTCCAATCCAAAACATGATTGA 2868 0.4111 MVKKSTKEEVKQELPPDDLRCSRTDGRQWRCKRRAMENVKLCEVHYLQGRHRQNKERVPESLKLSKDVKVKKKKKKKNDVVEIRSKKNKKKKRKHVDVQLELIRMVLEREVDKKKNVKRNNNEEIELHYSEGELRKELPNGVMEIAPVSTPCDVEFQSNGKTFIAPRYFRSKNVDKRVPFDNLQVLKKCGGKKCHCCQSSDSGNLIKCSNCQKEFFCLDCIKRRYSETPNEVKTACPVCRGTCTCKYCRAGLCKDNESKDHLAGRNSVHRILHFHYLICMLLPVLKQISEEQRTELETEAKNKGKNISDILIKQVEFGRNEKNNCNYCHSSILNLHRSCLSCSYSLCLRCCQALSQGSPFEHINSLVTEIPDKMDVCIDNESYPSDDNTISSDDVTDTSLLSDWTGCNGTTDSVSCPPSELGGCGNTHLDLRCVFPLSWIEEMETKAEEVVCSYEVPEILDKNSSCSLCSDKDHKTNRHKQSQEAARREDSNDNCLFYPTAFAISSDHCEHFQKHWGKGHPVVVRNVLRSRKNLSWDPLVMFCDYLEESISRYENNKDLLEACLDWCEVEINIKQHFTGSLRCRPQKNDFHEMLKLNGWLSSQLFKKQFPDHFAQVIDALPLQEYMNPMSGLLNLAAYMPDGSAKHDKGPYVHISYGCADKEACSVLNISYEPYDVVDIMAYTTDAPLSPDHLANVTKLLKKHQTLCQRGSPMNTSEHVEDKEQKETESIAMEGTDFYRRVNRTSSINEVKTMPSQSLEENASINEECVSGSDSDSDSDSEKTQSSLPLRKTVRSTEMYSVAQWDVFRRQDEPKLLEYLKRHADEFSCASEHHGKKMVQPILDQSIFLDTTHKMRLKEEFNIEPWTFEQHVGEAVIVPAGCPYQIRNSKCCVHVVLEFMSPENVAECIQLTDEIHLLPEDHIAKVDMLEARKMALNSVETAIKEIHELTSNPKHD 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi466g00002 955 ProSiteProfiles WRC domain profile. 15 59 IPR014977 -
Vivi466g00002 955 MobiDBLite consensus disorder prediction 70 94 - -
Vivi466g00002 955 ProSiteProfiles JmjC domain profile. 618 915 IPR003347 -
Vivi466g00002 955 SMART cupin_9 609 915 IPR003347 -
Vivi466g00002 955 Pfam WRC 16 56 IPR014977 -
Vivi466g00002 955 Pfam JmjC domain, hydroxylase 797 896 IPR003347 -
Vivi466g00002 955 MobiDBLite consensus disorder prediction 766 789 - -
Vivi466g00002 955 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 16 951 IPR045109 GO:0032454|GO:0033169
Vivi466g00002 955 Gene3D Cupin 500 924 - -
Vivi466g00002 955 SUPERFAMILY Clavaminate synthase-like 804 943 - -
Vivi466g00002 955 MobiDBLite consensus disorder prediction 708 727 - -
Vivi466g00002 955 MobiDBLite consensus disorder prediction 70 95 - -
Vivi466g00002 955 ProSiteProfiles Zinc finger RING-type profile. 194 240 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi466g00002 16 55 GRF Transcription Factor Family AT4G37740 52.500 4.74e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vivi466g00002 JmjC 6.1e-10 CL0029