LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi463g00024	ATGTTGTTGAGTTTGTTTTGGCAAACTCAGTGGGGATTCGAAAAGATGACGCATATGCTAACCCAAATTTGGAGATGGCTGGTGCAGCCAGAAGTGTGGAGATTTGTAGGCTTTGCCTCAGCTGTTGTTGGACTCGTCAGTTATGCTCTAAGCTCTTCCTTCAACTATCTCTTTGGAAGTTGGAATCTCTTGAAGGTTTTTCTTTACTGCATTTTCAGTTTCTTCATCAGCCTCATGATTTTCTTTGCAAAATTATTACAACACTCCACAAGTCTTCGGTTCAAAGCTCATACAGCATTTCTTGTACTGGCAATCACATCTGCCTATTCCTTTTTCTTCGACAAAAAGGTGAATGGGAAACCAGATCTATATAGCCTCATTTCATATGCTGCCTTTGCTATCATGTCACTCAGCCTGTCAAGGCAAACTCATTTTGGATTCGAAATCGATCTTCTCTACTTCTTTCTTGGATGTCTAATTGTGCTACTCATGAAGATTAAATTACAGTTATTTTTTGTTGGAGCAGGTTTCAGCTATTCCCTTATTATTCTCCGTTCTTCCTTTTCTTCAATAGATGCTGGAGCAAATAATCCGCACTCTGATCTCCAAAATGGAAATTCGGTGGTTCTTTCTATAGCTTCTCTACAACTCACCAGTACTGATACTGCTAGTGCTACTAGCAGTGCCAATAACAGTAGCATCGGTTCACCACAATTGGTGATCACCGCTGATATTAGTAATATGATGGAACAACTTCAGACATTTGTAACGGAGCTTCGGCGTGAAAATTCAAATTTCATTCAAATGGTGTTGGAGTATGTAAAAAAATATGTTGAGGAATACTCTGAATTGGTGGTAACCGATACTAACTTCATGATGGATGCGCTGAAGCCAGAAACCATCAAAGGCCTTGAGGAAACAGCAAAGGTTATGATGAGCTCTGGATTTGAGAAAGATTTTTCAGATGTCTACATCGATTGCCGTAGGGAATGCTTAAATGAGTGCCTAATGCATAGATTATTCGGGTTACAGAAGCTCAGCATCGAGGACATTCACAATATGCCATGGAACGTCCTCGAAGCCCAAATTGAGAAATGGATTAAAACTTTCAATATCACTCTGAAGATACTCTTTCCTGGCGAGCGACGAATCTGTGACCGCATTTTTTTTGGATCCTCATCGGCAGCTGATTTTTCCTTCGTGGAAATCTGCAGGGAATCCACCATTCAGTTGCTGAGTTTTGCTCAATCTGTCGCCTCTGGAAGCCATTCCCCAGACCGTTTGTTTAAAATGCTGGAGGTGTTGGAAACACTGCGTGACTTAATTCCAGAAATTGAATCGTTCTTTTGTGATGAATACAGTGTGTCTCTAAGGAATGAAGCAAACACCACACGGAAGAAATTGGAAGAAGCAATCAGAGACATTTTCATTCAATTGGAGGAATTTTACAGGCAAGAGCATAGGTATCTGGAGTCATTGGAGAGCAATTTAAATGCCAGATCCAAATTCTACGATGGCTCTTTTTCAGGGGATATTTTCTTGATGAACAATGGCACATACATAATCCCAATTGCAGAAGATAATGAATTAGGATCCCTTTTGGAGAATGATTGGATCCGACAATATGCTTGGAAAGTTTTGCACTACAATGGACAACAGAACATGAGCACTATCTCACCCGAATTAACCCATGAGGTGAATGTGAAAGATTCCGAAGCATTCCCCTGCCAACCGCGAGACTCAAGACGTCATGGGTCGACCCTGGAAGAGGAGATTGGCTTCAAATATCCTAGGAGTATGTACAGGTGTTACCACATGAAGCAACGTGCGTGTCGAGCCAAAAAGAGTATCCAACAACTTGGTGACAATCCAAACGTGTTTGAAATAATATACTATCATGGACATTCCTGCAACACTCCCTTAATAAGACCAGCATCACAATCAGGCACACCAGCCGAATCCATAAACACTATACATGGAAAAGCTAGCTGGTCCTGCCGACGGTGGGTATCATCCTATGATGGAAAGCGTCGTATGCTATCTTCTTTCTGTCATTAA	2058	0.413	MLLSLFWQTQWGFEKMTHMLTQIWRWLVQPEVWRFVGFASAVVGLVSYALSSSFNYLFGSWNLLKVFLYCIFSFFISLMIFFAKLLQHSTSLRFKAHTAFLVLAITSAYSFFFDKKVNGKPDLYSLISYAAFAIMSLSLSRQTHFGFEIDLLYFFLGCLIVLLMKIKLQLFFVGAGFSYSLIILRSSFSSIDAGANNPHSDLQNGNSVVLSIASLQLTSTDTASATSSANNSSIGSPQLVITADISNMMEQLQTFVTELRRENSNFIQMVLEYVKKYVEEYSELVVTDTNFMMDALKPETIKGLEETAKVMMSSGFEKDFSDVYIDCRRECLNECLMHRLFGLQKLSIEDIHNMPWNVLEAQIEKWIKTFNITLKILFPGERRICDRIFFGSSSAADFSFVEICRESTIQLLSFAQSVASGSHSPDRLFKMLEVLETLRDLIPEIESFFCDEYSVSLRNEANTTRKKLEEAIRDIFIQLEEFYRQEHRYLESLESNLNARSKFYDGSFSGDIFLMNNGTYIIPIAEDNELGSLLENDWIRQYAWKVLHYNGQQNMSTISPELTHEVNVKDSEAFPCQPRDSRRHGSTLEEEIGFKYPRSMYRCYHMKQRACRAKKSIQQLGDNPNVFEIIYYHGHSCNTPLIRPASQSGTPAESINTIHGKASWSCRRWVSSYDGKRRMLSSFCH	685

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi463g00024	685	Pfam	WRKY DNA -binding domain	594	638	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi463g00024	685	SMART	WRKY_cls	593	639	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Vivi463g00024	685	Gene3D	Exocyst complex component Exo70	487	574	-	-
	Vivi463g00024	685	Gene3D	Exocyst complex component Exo70	240	486	-	-
	Vivi463g00024	685	PANTHER	EXOCYST COMPLEX PROTEIN EXO70	488	549	IPR004140	GO:0000145\|GO:0006887
	Vivi463g00024	685	SUPERFAMILY	WRKY DNA-binding domain	593	640	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi463g00024	685	SUPERFAMILY	Cullin repeat-like	248	549	IPR016159	-
	Vivi463g00024	685	Pfam	Exo70 exocyst complex subunit	365	486	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Vivi463g00024	685	Pfam	Exo70 exocyst complex subunit	490	549	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Vivi463g00024	685	Gene3D	WRKY domain	588	641	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Vivi463g00024	685	Coils	Coil	454	485	-	-
	Vivi463g00024	685	ProSiteProfiles	WRKY domain profile.	593	640	IPR003657	GO:0003700\|GO:0006355\|GO:0043565

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi463g00024	286	550	EXO70 exocyst subunit family	AT5G58430	46.395	8.71e-74	248

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Vivi463g00024		Exo70	4.1e-27	CL0295

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi463g00024	-		-	vvo:131631685	1295.41