Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi461g00002 ATGGCCACGCCAACCACAGAACAAAACATCTCACGTGGTTTTCACATGCACGACACCGTCACGGACGAAGACGAAGATGTAATTGAGGAAAATCATGGAGAAGATGAAGAAGAAGAAGAAGAGCAGCAAGCAGTGAATTATGCAGGTATTAGTCGAGTTGTAGACCCAAGAGAAAAATGGGTGCAAGAATGGAACAGAGTGTTCTTGCTAGTATGCGGAGCAGGGTTGTTTGTGGACCCACTGTTCTTCTACGCCCTTTCCATCAGCGACTCATTTATGTGCCTCTTCATCGACGGCTGGTTCGCCATCACTGTAACGGTGCTCCGTTGCATGACTGACGCCTTGCACCTTTGGCATATCTTCCTCCGCTTTAAAATGGCAAAACGCAGCTCATTCGTTTTCTCCGGTGATACTGCCGGAGCTGATGCCCGCTGCTCGGTCGCTCTTGCTTATCTTAAGTCCCGCCGCGGCTTCTTCTTTGATCTCTTCGTTATTCTTCCTATACCTCAGATTGTGCTTTGGGTGGCAATCCCTTCTCTGTTAGAGCAAGGTTCAGTCACGTTGGTGATGACAGTATTATTAATTGTATTTTTGTTCCAATACCTTCCCAAAATTTATCACTCAGTATGCCATTTGAGACGCACACAAAACCTGTCTGGCTACATTTTTGGAACTGTTTGGTGGGGTATTGCTCTTAACATGATCGCCTATTTTGTAGCTTCCCATGCTGCAGGGGCATGTTGGTACTTGTTGGGGATCCAAAGAGCAACGAAATGTCTAAAAGAGCAATGTGTGAAAACAAATGGTTGTGGCATAAAAATATTGTCTTGTCATAAGCCAATATATTATGGAAGTACAAGATTGTTGAATAAAGATATTGGAAGAATGTGGTGGGCAGAGAACAGGGAAGCAAGGTCTACATGCATAAATGGTCCAGATAACTTCAACTATGGAGCTTATAAATGGACTGTTCAACTTGTCATTAATGATAACAGGCTTGAAAAGATACTTTTTCCTATCTTTTGGGGACTAATGACTCTCAGCACGTTCGGGAACCTAGAAAGCACAACGGACTGGCTAGAAGTAGTTTTCAATATCATAGTCTTGACTAGTGGGCTTCTTCTTGTGACTATGTTAATAGGAAACATCAAGGTGTTTTTACATGCAACAACATCAAAGAAACAAGTGATGCAATTGAAGATGAGAAATGTTGAATGGTGGATGAGGAAAAAACATTTGCCGCAGGGGTTTCGACAACGTGTGCGTAACTATGAAAGACAACGTTGGGCTGCTATGCGTGGGGTTGATGAATGTGAAATGACCAAAAATCTTCCCGAAGGTTTAAGAAGAGACATTAAATATCATCTTTGTTTGGATTTGGTCAGACAGGTGCCGTTGTTTCAACATATGGACGAGCTGGTTCTAGAGAATATATGTGACCGAGTCAAATCGCTCATATTCACCAAGGGAGAAACAATAGCAAGAGAAGGAGACCCAGTTCAAAGAATGCTATTTGTGGTGAGGGGTCACCTTCAAAGTAGCCAAGTATTAAGAGACGGGTTAAAAAGTTGTTGCATGTTAGGGCCAGGAAATTTCAGTGGTGATGAGCTTCTTTCATGGTGTTTGAGAAGACCCTTCATAGAGCGGCTTCCTCTGTCAACATCAACTCTTGTCACACTTGAAACAACAGAGGCTTTCGGTCTTGAAGCAGAAGATGTCAAGTATGTCACACAACATTTCAGATACACGTTTGTGAAGGAAAAGGTCAAGAGAAGTGCTAGGTATTATTCACCAGGGTGGAGAACTTGGGGTGCTGTGGCCATTCAGTTGGCATGGAGAAGGTACAGACATAGGTTGACATTGAACTCATTGTCTTTTATAAGACCCAGAAGACCCTTGTCAAGATGCTCTTCCTTGGGAGAGGATAGGCTTCGACTCTACACAGCTTTGTTAACTTCACCAAAGCCTAATCAGGATGATTTTGATTTTTGA 1992 0.4297 MATPTTEQNISRGFHMHDTVTDEDEDVIEENHGEDEEEEEEQQAVNYAGISRVVDPREKWVQEWNRVFLLVCGAGLFVDPLFFYALSISDSFMCLFIDGWFAITVTVLRCMTDALHLWHIFLRFKMAKRSSFVFSGDTAGADARCSVALAYLKSRRGFFFDLFVILPIPQIVLWVAIPSLLEQGSVTLVMTVLLIVFLFQYLPKIYHSVCHLRRTQNLSGYIFGTVWWGIALNMIAYFVASHAAGACWYLLGIQRATKCLKEQCVKTNGCGIKILSCHKPIYYGSTRLLNKDIGRMWWAENREARSTCINGPDNFNYGAYKWTVQLVINDNRLEKILFPIFWGLMTLSTFGNLESTTDWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQVMQLKMRNVEWWMRKKHLPQGFRQRVRNYERQRWAAMRGVDECEMTKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDELVLENICDRVKSLIFTKGETIAREGDPVQRMLFVVRGHLQSSQVLRDGLKSCCMLGPGNFSGDELLSWCLRRPFIERLPLSTSTLVTLETTEAFGLEAEDVKYVTQHFRYTFVKEKVKRSARYYSPGWRTWGAVAIQLAWRRYRHRLTLNSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDDFDF 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi461g00002 663 MobiDBLite consensus disorder prediction 1 42 - -
Vivi461g00002 663 MobiDBLite consensus disorder prediction 1 15 - -
Vivi461g00002 663 Pfam Cyclic nucleotide-binding domain 487 574 IPR000595 -
Vivi461g00002 663 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 42 623 - -
Vivi461g00002 663 SUPERFAMILY cAMP-binding domain-like 392 580 IPR018490 -
Vivi461g00002 663 FunFam Cyclic nucleotide-gated ion channel 1 393 457 - -
Vivi461g00002 663 SUPERFAMILY Voltage-gated potassium channels 56 387 - -
Vivi461g00002 663 Pfam Ion transport protein 64 383 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi461g00002 663 Gene3D Jelly Rolls 464 582 IPR014710 -
Vivi461g00002 663 CDD CAP_ED 466 572 IPR000595 -
Vivi461g00002 663 FunFam cyclic nucleotide-gated ion channel 4 464 582 - -
Vivi461g00002 663 MobiDBLite consensus disorder prediction 23 42 - -
Vivi461g00002 663 ProSiteProfiles cAMP/cGMP binding motif profile. 466 545 IPR000595 -
Vivi461g00002 663 Gene3D Helix hairpin bin 391 457 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi461g00002 50 662 Ion Channels AT5G54250 77.868 0.0 999
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi461g00002 K05391 - gmx:100783341 1096.65