Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi455g00002 ATGAACATGAATCCTCATCATGGTGGAGTGAAGGATGGATTTGTTAGAGGAAGTTCTTCCTTTTGTATGGTTGATGGTCCTCAACCAATGGAAGGACTTCATGAAAATGGTCCTCCACCATTTCTCACAAAAACATATGATATAGTTGATGACCCTTCCACAAATCATATAGTTTCATGGAGCACAGGTAACAACAGCTTTGTTGTGTTGGATCCTCAAGCCTTTTCTGTTAGTCTTCTCCCAAGATTCTTCAAACACAACAACTTCTCCAGTTTTGTCAGACAACTTAACACATATGGATTCAAAAAGGTTGATCCAGATAAGTGGGAATTTGCCAATGAGATGTTTCTAAGAGGACAAAAAATTCTTTTGAAGAACATTAGAAGGAGAAGAGCAAATAAATCACAAACAATGCAACAACAAGCTCTAGACCCTTCTTGTGTTGAGGTAGGAAGGTTTGGATTAGACGGAATCGAAGTCGATCGGTTACGGCGCGACCGACAAGTTCTAATGGTGGAGTTGATGAAACTCAGACAACAGCAACAGAATACTATAGCTCACCTTGGATTAATGGAAGGAAGGGTTAAAAGAAATGAGCAGAAACAAAAACAGATGATGAATTTCTTGGCAAGAGCAATGCAAAATCCTAATTTCTTGCAACAGTTGGTTCAAAAGAAGGAATGGAGAAAAGAGTTAGAGGAAATGATTTCTATGAAGAGAAGAAGACCTATTGATCAAGCTGGGCCTAGTAATGTTGAAGTTGGTGATGAGTTAGGATATGATGCTGAAGATGATTGTTTAGCTTCTGTTAAAGTTGAAGAACATAAAGATTTTGAGGAGGGTACTAATGTGGTTAATCAAGTTGAAATTAGAGATAAAGAGATTGATATTGAAATGTTTTGGCAAGATTTGTTTAATGAAGGTAATGTTGAAGATAAAAATGTTGTGGATGTTGAAGATGTTGATGTATTGGTTGAGCAACTTGGTTATCTTGCTTCTAGTCCTAAATAG 1011 0.3709 MNMNPHHGGVKDGFVRGSSSFCMVDGPQPMEGLHENGPPPFLTKTYDIVDDPSTNHIVSWSTGNNSFVVLDPQAFSVSLLPRFFKHNNFSSFVRQLNTYGFKKVDPDKWEFANEMFLRGQKILLKNIRRRRANKSQTMQQQALDPSCVEVGRFGLDGIEVDRLRRDRQVLMVELMKLRQQQQNTIAHLGLMEGRVKRNEQKQKQMMNFLARAMQNPNFLQQLVQKKEWRKELEEMISMKRRRPIDQAGPSNVEVGDELGYDAEDDCLASVKVEEHKDFEEGTNVVNQVEIRDKEIDIEMFWQDLFNEGNVEDKNVVDVEDVDVLVEQLGYLASSPK 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi455g00002 336 Pfam HSF-type DNA-binding 41 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi455g00002 336 Coils Coil 160 180 - -
Vivi455g00002 336 ProSitePatterns HSF-type DNA-binding domain signature. 80 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi455g00002 336 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 27 249 IPR027725 -
Vivi455g00002 336 SUPERFAMILY "Winged helix" DNA-binding domain 36 130 IPR036390 -
Vivi455g00002 336 SMART hsfneu3 37 130 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi455g00002 336 Gene3D - 33 131 IPR036388 -
Vivi455g00002 336 PRINTS Heat shock factor (HSF) domain signature 79 91 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi455g00002 336 PRINTS Heat shock factor (HSF) domain signature 92 104 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi455g00002 336 PRINTS Heat shock factor (HSF) domain signature 41 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vivi455g00002 336 FunFam Heat shock transcription factor 1 34 131 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi455g00002 27 334 HSF AT3G22830 56.425 1.12e-123 359
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vivi455g00002 HSF_DNA-bind 4.3e-31 CL0123