Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi451g00004 ATGGATTGGGATTGGAAAGAGTTTGCTTGGGATCCATCTGGGTTGGAGGAGATGAAGAATGAAGGTGATTCAATGGATTTGAGGCTTGGTGAGGCTTCTGATTCATTGGAAAAATCGGTTCGGGTTCGGGATAGTACGGGGAGGAAGGATGATGATTTGAGAGGCGTGTCGTCGTTTTCTGGATCGAAAAGATCGCGGTTGCAGAATGGATTGTTGAATTTGATTTGCTCGGTTGATGGATGTAACGCGGATCTTAGTGATTGTAGGGAGTATCATAAGAGGCATAGGGTTTGCGAGAAGCACTCGAAAACTCCTGTTGTGTTGGTTGGAGGTAAGCAGCAGAGATTCTGCCAGCAATGTAGCAGGTTTCATTCGCTTGCGGAGTTTGATGAAGTTAAGAGGAGTTGCAGGAAACGTCTTGATGGGCATAATAGGCGGAGGAGGAAGCCTCAACCGCCTTCTCTTTTCATGGCGGCTGAGAAATTCATGTACAATTACAAAGGTCCTAGAATCCTGCACTTTGGGAACCCTCAGGCATATGTGAATCCTATTATGAGAAACATTTGGCCAACCGAAGCTGAACCAGGTTACGACAATCACCGACTTTTGTATCGAATCGATAAACATAAACAGGATAAAGGACATCCTCTATGGCAAGAAACTGTCCCTAAAGCCGGCGATGTTAATGAAGCAGCGCTGGGGATTCCTATCAGTCAGCCTATCCGCGGTGCCGATGGTTCATCTGCAGGTGGAAAAGGCGGTAGGAAGCTCTCTTCTGATAGCAAACCTGGATCTTTTGACTCGGGTTGTGCTCTCTATCTTCTGTCAACACTTCAATCACAAAGTTCCGAGTTGAGTTTGATGCAGTCCAGCATCAACGACAGCCCAACACAGTCTTCATCCGGAACGATGCGTTTTGATGCCACGAACGAGTACTTGTGCTCAGGAAAGGTTAAAGATAAGCCTAATAATGGTCATGTATTTGTTCTAGATGCAGACACTACAAACCTTCAATGTAATGGGATGCTGCAAATGGGACCTAATAACGGTTTGATGGAAAATGAAAACTCGCTAACGCTTCCATTTTTCTGGGAGTAA 1098 0.4554 MDWDWKEFAWDPSGLEEMKNEGDSMDLRLGEASDSLEKSVRVRDSTGRKDDDLRGVSSFSGSKRSRLQNGLLNLICSVDGCNADLSDCREYHKRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLAEFDEVKRSCRKRLDGHNRRRRKPQPPSLFMAAEKFMYNYKGPRILHFGNPQAYVNPIMRNIWPTEAEPGYDNHRLLYRIDKHKQDKGHPLWQETVPKAGDVNEAALGIPISQPIRGADGSSAGGKGGRKLSSDSKPGSFDSGCALYLLSTLQSQSSELSLMQSSINDSPTQSSSGTMRFDATNEYLCSGKVKDKPNNGHVFVLDADTTNLQCNGMLQMGPNNGLMENENSLTLPFFWE 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi451g00004 365 SUPERFAMILY SBT domain 75 155 IPR036893 GO:0003677|GO:0005634
Vivi451g00004 365 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 32 302 IPR044817 GO:0003677
Vivi451g00004 365 MobiDBLite consensus disorder prediction 238 263 - -
Vivi451g00004 365 FunFam Squamosa promoter-binding-like protein 14 68 137 - -
Vivi451g00004 365 Gene3D - 69 137 IPR036893 GO:0003677|GO:0005634
Vivi451g00004 365 MobiDBLite consensus disorder prediction 38 59 - -
Vivi451g00004 365 MobiDBLite consensus disorder prediction 38 57 - -
Vivi451g00004 365 Pfam SBP domain 76 149 IPR004333 GO:0003677
Vivi451g00004 365 ProSiteProfiles Zinc finger SBP-type profile. 73 150 IPR004333 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi451g00004 75 191 SBP-box Gene Family AT5G50670 59.829 2.42e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi451g00004 SBP 5.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi451g00004 - - lja:Lj1g3v3847150.1 516.924