Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi450g00034 ATGAGCGATGAACCACGAGAACCACCTCAACCTTCCTCGAGCAATGACGGCCATAAGTCAGATAGAAAACAAATAGATAAAGAGAATTCTTCTTTAAGAAGCAGACGACCCCGACCGGGATTTTCTGATTCGTTTTCTAGTATTGACTTGGCAGCTTTAGAGATTGAGGAAGGAAGCCAATCTGAGTATTCTCCTAGAAGTCAAGAATCTGAAACACCAAGTTCGAGGGCAAGCACTTCTGATTCCGAGGGAGGTTTAAGAGGCAATCTTAATAATAATCAGTGGCGCGGTTTCTTTAAGTTGCTAAAGAAGGGATCACAAATGCCTTTTCAGACCTTTCATCCGTTGAAAAATGTTCCAAAACTTACTAGAAGAAAAAGCAAAAGAATTAGGGAAGATCTCATCCCATCTCTGAATTCACCGGCTCTTCAATCTTCTTTTGACGCCGAGTTTTGCTGCTTCAAATCTTCGTGGAAGAATTTCTCTCTCGCTGAGATTCTAGCCGCAACAGATGACTTTAGCCATGATAATTTGATTGGGGAGGGAGGCTATGCTGAGGTTTACTTAGGGAAATTGGAAGATGGAAACTTTGTTGCCATTAAACGGTTGACAAGAGGTTGCCAAGAAGAAATGACTGCGGATTTCTTGTCTGAGCTTGGCATTATAGTGCATGTGGATCACCCCAATATTGCTAGATTGATTGGATATGGTGTTGAAGGTGGAATGTTTCTTGTTCTTCAATTGTCTCCTCATGGAAGCTTGTCATCCATACTTTACGGACCTAGAGAAAAACTGAATTGGAGCCTTAGATTTAAGATTATTTTGGGGACTGCTGAAGGTCTTCGCTATCTGCATGAAGGATGTCAAAGAAGGATTATTCACAAAGATATCAAAGCTTCTAACATTCTCCTCTCAGAGGATTTTGAGCCTCAGATATCTGATTTCGGGCTCGCAAAGTGGTTACCTGATCAATGGACTCACCATACTGTCTCCAAAGTGGAAGGCACATTTGGCTATCTTCCTCCTGAATTCTTCATGCATGGTATAGTAGATGAAAAAACTGATGTATATGCTTATGGTGTGCTATTACTGGAGCTCATTACCGGGCGACAAGCTTTGGATAGTTCACAAAAAAGTCTGGTCATGTGGGCAAAGCCTTTGCTATCTAGTAATAACATCAAAGAGCTAGTTGATCCAATTTTAGGCGACGCTTATGATGAAGAACAGATGAAACTTGTAGTCTTAAATGCTTCTATGTGTATAGACCAGTCCTCAATACAACGACCGCAAATGAGTGAGGTCTTACAGATACTAAGAGGAGAAGAAGAGAGCTTGAGAATGTTGAAAGAAAGACAGAAGTCTAAACTTCATAGAACATACTCTGAAGAACTATATGATGCAGAAGATTATAACTCGACAAAGTTTTTGAGCGACCGTGATCGACATATGGAGACTATTTTAGGCACGAGCAATCCAAATTAG 1482 0.4076 MSDEPREPPQPSSSNDGHKSDRKQIDKENSSLRSRRPRPGFSDSFSSIDLAALEIEEGSQSEYSPRSQESETPSSRASTSDSEGGLRGNLNNNQWRGFFKLLKKGSQMPFQTFHPLKNVPKLTRRKSKRIREDLIPSLNSPALQSSFDAEFCCFKSSWKNFSLAEILAATDDFSHDNLIGEGGYAEVYLGKLEDGNFVAIKRLTRGCQEEMTADFLSELGIIVHVDHPNIARLIGYGVEGGMFLVLQLSPHGSLSSILYGPREKLNWSLRFKIILGTAEGLRYLHEGCQRRIIHKDIKASNILLSEDFEPQISDFGLAKWLPDQWTHHTVSKVEGTFGYLPPEFFMHGIVDEKTDVYAYGVLLLELITGRQALDSSQKSLVMWAKPLLSSNNIKELVDPILGDAYDEEQMKLVVLNASMCIDQSSIQRPQMSEVLQILRGEEESLRMLKERQKSKLHRTYSEELYDAEDYNSTKFLSDRDRHMETILGTSNPN 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi450g00034 493 MobiDBLite consensus disorder prediction 1 15 - -
Vivi450g00034 493 FunFam receptor-like cytosolic serine/threonine-protein kinase RBK2 250 452 - -
Vivi450g00034 493 Gene3D Phosphorylase Kinase; domain 1 138 247 - -
Vivi450g00034 493 SUPERFAMILY Protein kinase-like (PK-like) 158 464 IPR011009 -
Vivi450g00034 493 ProSitePatterns Serine/Threonine protein kinases active-site signature. 292 304 IPR008271 GO:0004672|GO:0006468
Vivi450g00034 493 MobiDBLite consensus disorder prediction 60 91 - -
Vivi450g00034 493 FunFam Receptor-like cytosolic serine/threonine-protein kinase RBK2 143 247 - -
Vivi450g00034 493 SMART serkin_6 173 437 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi450g00034 493 MobiDBLite consensus disorder prediction 16 34 - -
Vivi450g00034 493 MobiDBLite consensus disorder prediction 1 91 - -
Vivi450g00034 493 Gene3D Transferase(Phosphotransferase) domain 1 250 465 - -
Vivi450g00034 493 ProSitePatterns Protein kinases ATP-binding region signature. 179 201 IPR017441 GO:0005524
Vivi450g00034 493 Pfam Protein tyrosine and serine/threonine kinase 176 383 IPR001245 GO:0004672|GO:0006468
Vivi450g00034 493 PANTHER OS08G0249100 PROTEIN 54 478 IPR046958 -
Vivi450g00034 493 ProSiteProfiles Protein kinase domain profile. 173 445 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi450g00034 144 458 Receptor kinase-like Gene Family AT1G53420 39.319 1.23e-70 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Vivi450g00034 PK_Tyr_Ser-Thr 1.8e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi450g00034 - - lja:Lj6g3v1915960.1 840.491