Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi450g00027 ATGGAACCCCAACCCCAACCTCAACCTCACCCTACTCCTCCTCCGATGGACGCTCCCGACGATCTCTCCTCCGTTTGGGACCTAAGCTACCTCCTCGACTTCAATCTCGACGACGACGCATTACTTAACTTAAACCTCCAAAACGAACCTCCACCTCCCCCTCCAATTCCAAACCCTAACCCTAACCCCAACCCTCCGGAGAATGACAAGATCCGAAAACGCGACCCGAGACTTACTTGCTCCAACTTCCTCGCGGGTCATGTACCTTGTGCATGCCCCGAACTCGATGCGCTGCTTGAGGATAACGGTTTACCAGGCAAGAAACGCGCTCGAGCTGCGCGTGCGTCTGCATCCGCGCGATGTCAGGTTCCGAGTTGTGAAGTTGATATCTCTGAACTTAAAGGCTATCATCGACGGCATAGGGTTTGTTTGCGATGTGCTAATGCTGTTACTGTTCTTATTGACGGCGAGGCGAAGAGATACTGTCAGCAGTGTGGAAAGTTTCATGTTTTACCGGATTTTGACGAAGGGAAAAGGAGTTGTAGAAGAAAATTGGAGCGGCATAATACTAGGAGGCGGAGAAAGCCTGCTGATTCTGCATCAGCGGTTGATCATGAAGTTCAAACTGTTACTGTGAATGATGATTCCAATTGTGATGGAGAAGCAGGGATAGATTATTCGAATTTGAGTAGTGAGAATATTGATAAAAGAGTGTCTTTGGATCATGAAGAAGAACCGGTTGCTGTTGGGTCCTCAACTCCAGAGACCCAGAATATTAATGGGGAGAGTGGTGTGTCCTTTGTTGCTTCTGCTGAAACACAAGCAAATGTTGGAAATGATGTTTCCAATCTTTCCAAATCACCTTCGTATTGTGACAATAAGAATGATTATTCATCTATGTGCCAAACAGGTCGGGTATCTTTTAAGCTTTACGATTGGAATCCTGCGGAATTTCCTAGAAGGCTACGGCTCCAAATATTCCAATGGTTGGCAAGTATGCCTGTGGAGCTGGAGGGATATATCCGCCCTGGGTGTACAATCCTGACAGTATTTGTTGCAATGCCAAATATTATGTGGATAAATTTACTCAAAGACCCTATGTATTATGTGCGTGATCTTGTTGCTCCCAAAAAGATGCTATCTGGAAGAGGCGCCGCTCTAATTCATCTGAATGACACGATCTTCCGTGTTATGAAAGATGGAAGTTCTGTGACAAAAGTCGAGGTAAACATGCAGGCACCTAAGCTTCATTACATTCACCCCACATGCTTTGAAGCAGGAAAACCCATGGAATTTTTTGCTTGTGGAAGTAACTTGCTGCAGCCTAAGTTTCGGCTTCTTGTATCATTTTATGGAAAGTATATGAAGTACGAGTATTGCGTTCCGTCTCCCCATAACTGGAGTGAAGACAGTATTTCTTGTTCGTTTGACAATCAGTTATATAAGATACGTGTCCCTCATATTGAGGAAAATCTCATGGGCCCTGCGTTTATTGAGGTTGAGAATGAGTCTGGTTTATCAAACTTTATTCCTATACTTATTGGGGATAAAGAAATTTGCACTGAAATGAAGATATTGCAACAAAAACAAGATGCATCTCTCCTTTCTAAACAATTTCGGTCTGCATCTGGTGGTTCTATTTGTAGCTCATGCAAAGCTTTTGTACATATTCATACATCGTCATCAGACTTGTTTGTAGATATAGCATGGTTACTTAAGGATCCTACTTCAGAAAATTTTGACAGAATGGTATCTGCTTCACAGATTCAAAGATATTGCCATTTGTTGGATTTTTTAATAAACAATGATTCAACTATCATTTTGGGAAAAATATTGCCAAATTTGATAATTTTAACAGAAAGCATAAAATCCAATACAAATGATGTTGACATTGTCCCGCTACTGAAATGCATGCATAATGCCAGAGATGCTATTTGTCAGAAAGGTGGAAGTATAATTTTGCACTCCAAAAGGGAAGGCTTTAAACCTGTCCGGTGCTGTTCTCAAGATGACAAGTTATCAGTTGATGAAGATAATTGTCAGAGTATCCTGTTTAATGCAGATCCAGAGTTGGGAGTTCCGAGAAGTCTTACTTTTGATGAAAAAAATCATAACACACCACTTTTGAAAAGGGATATTATAATGAATATGGAAGACTTGCCTAATAGACGCGACCATCGACATATTACCCAGGGATTCTTGACCTCTCGACCGACTATATTTGTACTTGTTTCGGTTGTTGTTTGTCTTGCTGTATGCGTATCCGTCTATCATCGTGGAAGGGTTACCGAGTTAGCAGTATCCATTAGAAGGTGTTTGTTTAACCATTAA 2331 0.4191 MEPQPQPQPHPTPPPMDAPDDLSSVWDLSYLLDFNLDDDALLNLNLQNEPPPPPPIPNPNPNPNPPENDKIRKRDPRLTCSNFLAGHVPCACPELDALLEDNGLPGKKRARAARASASARCQVPSCEVDISELKGYHRRHRVCLRCANAVTVLIDGEAKRYCQQCGKFHVLPDFDEGKRSCRRKLERHNTRRRRKPADSASAVDHEVQTVTVNDDSNCDGEAGIDYSNLSSENIDKRVSLDHEEEPVAVGSSTPETQNINGESGVSFVASAETQANVGNDVSNLSKSPSYCDNKNDYSSMCQTGRVSFKLYDWNPAEFPRRLRLQIFQWLASMPVELEGYIRPGCTILTVFVAMPNIMWINLLKDPMYYVRDLVAPKKMLSGRGAALIHLNDTIFRVMKDGSSVTKVEVNMQAPKLHYIHPTCFEAGKPMEFFACGSNLLQPKFRLLVSFYGKYMKYEYCVPSPHNWSEDSISCSFDNQLYKIRVPHIEENLMGPAFIEVENESGLSNFIPILIGDKEICTEMKILQQKQDASLLSKQFRSASGGSICSSCKAFVHIHTSSSDLFVDIAWLLKDPTSENFDRMVSASQIQRYCHLLDFLINNDSTIILGKILPNLIILTESIKSNTNDVDIVPLLKCMHNARDAICQKGGSIILHSKREGFKPVRCCSQDDKLSVDEDNCQSILFNADPELGVPRSLTFDEKNHNTPLLKRDIIMNMEDLPNRRDHRHITQGFLTSRPTIFVLVSVVVCLAVCVSVYHRGRVTELAVSIRRCLFNH 776
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi450g00027 776 MobiDBLite consensus disorder prediction 186 205 - -
Vivi450g00027 776 Gene3D - 112 182 IPR036893 GO:0003677|GO:0005634
Vivi450g00027 776 MobiDBLite consensus disorder prediction 47 66 - -
Vivi450g00027 776 MobiDBLite consensus disorder prediction 242 261 - -
Vivi450g00027 776 Pfam SBP domain 121 195 IPR004333 GO:0003677
Vivi450g00027 776 MobiDBLite consensus disorder prediction 42 73 - -
Vivi450g00027 776 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 73 598 IPR044817 GO:0003677
Vivi450g00027 776 MobiDBLite consensus disorder prediction 1 18 - -
Vivi450g00027 776 MobiDBLite consensus disorder prediction 1 23 - -
Vivi450g00027 776 SUPERFAMILY SBT domain 119 199 IPR036893 GO:0003677|GO:0005634
Vivi450g00027 776 ProSiteProfiles Zinc finger SBP-type profile. 118 195 IPR004333 GO:0003677
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi450g00027 13 770 SBP-box Gene Family AT5G18830 46.650 0.0 670
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vivi450g00027 SBP 1.5e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi450g00027 - - gmx:100776034 1055.43