Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi450g00022 ATGCATGGGGTTGTTTTATTATGCAGGGAGAATTTTAACCAGGAATTTGTGACTGAGACCGGGCTAAACAAAGAAGTTGCGGATAGTGGAGCCGGCGGGAAGCGTCCTGATATTTCACTTCAAGTTCCGCCTAGACCTTTAGGGTTTGGTAGCGGTAGCACGCGTGGGCGGGTTCTGGACCATTCTCAAAGTTTCTCTAAAGTGATATCATCACCGAAAGACTTTTTGCGGGCTTTGAGCTTTAAAAGAAAAGAAAATGTAGTAGATGGTGAATCAAGCAGCCTCCTTAATTCAGACCCTAAGCCAGCTGCAGACAGTACTAGGATGGCCTCCATATCGGAAGTTTCATGGTCAAGATGTACTTCTCTTCCGGTTTCACATGCACCTAATCTGTCCCCTTTAGTTGCTACGCCTGTGTCCGCGAGGACATATAATGAACAACAGATTAAGCCACGTAAAGATGTTAAATCTAAGGTTTCGAGGTCCCTTTCAATTCCTGCACGAAATGTTGTTATCGTAAGATCCGTCTCTTTTGTTACCCGCAATGAACAAGAACAACAAGATACAAATGACGATCAAATAACTCCTGCGCCGGTAGAAGTTACTGCCGATGAAGAAATTCCTGAAGAGGAAGCGGTGTGCAGGATATGTCTCGACGCATGCGATGAAAGAAATACCTTTAAAATGGAATGCCGTTGCAAAGGTGGTCTAGATTTGGTGCATGAAGAATGCTTAATCAAATGGTTCAACACAAAAGGAAACAAGAAATGTGATATATGCTTGGAAGAGGTTCAGAACTTACCGGTAACCTTGCTCCGCATACCCAGCTCCGTTCAACAAAGAAACAGACAGTTGCAGGATCGCCAAACCTTAAATTCAGAGACACTAAGTGCTTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAACTACTGCTTCCTGATTTGAAGACTCAAGCTCTCATTTTATCGGCACCGTTTTCCTTTACATTGGGCCTCTTAGCATCTGTTTTTGCAATCGTCCTTGCAATCAAAGAGTATATATGGACATACGCCGCTCTTGAGTTTGCACTTGTGGCTTTAACTGTGCATCTGTTTTATACTTATTTCCATTTGGCGGCCATTTATTCGATACTACTTTCATCGATTTTGGGTTTTGGAGTTGCTATGGGAATCAACTATTTGTATATCCAGTATGTGACATGGAGATTTCAGATCTCTACTAATGATACTCCCGTATGA 1269 0.4255 MHGVVLLCRENFNQEFVTETGLNKEVADSGAGGKRPDISLQVPPRPLGFGSGSTRGRVLDHSQSFSKVISSPKDFLRALSFKRKENVVDGESSSLLNSDPKPAADSTRMASISEVSWSRCTSLPVSHAPNLSPLVATPVSARTYNEQQIKPRKDVKSKVSRSLSIPARNVVIVRSVSFVTRNEQEQQDTNDDQITPAPVEVTADEEIPEEEAVCRICLDACDERNTFKMECRCKGGLDLVHEECLIKWFNTKGNKKCDICLEEVQNLPVTLLRIPSSVQQRNRQLQDRQTLNSETLSAWQDFVVLVLISTICYFFFLEQLLLPDLKTQALILSAPFSFTLGLLASVFAIVLAIKEYIWTYAALEFALVALTVHLFYTYFHLAAIYSILLSSILGFGVAMGINYLYIQYVTWRFQISTNDTPV 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi450g00022 422 SMART ringv_2 213 261 IPR011016 GO:0008270
Vivi450g00022 422 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 200 268 IPR013083 -
Vivi450g00022 422 PANTHER OS02G0165000 PROTEIN 60 418 - -
Vivi450g00022 422 ProSiteProfiles Zinc finger RING-CH-type profile. 206 267 IPR011016 GO:0008270
Vivi450g00022 422 SUPERFAMILY RING/U-box 210 263 - -
Vivi450g00022 422 CDD RING_CH-C4HC3_MARCH 214 260 - -
Vivi450g00022 422 MobiDBLite consensus disorder prediction 24 45 - -
Vivi450g00022 422 Pfam RING-variant domain 214 260 IPR011016 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi450g00022 200 321 C3H Transcription Factor Family AT2G37950 25.954 4.28e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi450g00022 - - gmx:100527094 621.313