Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi450g00020 ATGCAAGACCAACAACCATTAGCAACTCATGAACCTCCCATGGTTTCCCACCAGACTGAGACCGGGCTAAACAAAGAAGTTGCGGATAGTGGAGCCGGCGGGAAGCGTCCTGATATTTCACTTCAAGTTCCGCCTAGACCTTTAGGGTTTGGTAGCGGTAGCACGCGTGGGCGGGTTCTGGACCATTCTCAAAGTTTCTCTAAAGTGATATCATCACCGAAAGACTTTTTGCGGGCTTTGAGCTTTAAAAGAAAAGAAAATGTAGTAGATGGTGAATCAAGCAGCCTCCTTAATTCAGACCCTAAGCCAGCTGCAGACAGTACTAGGATGGCCTCCATATCGGAAGTTTCATGGTCAAGATGTACTTCTCTTCCGGTTTCACATGCACCTAATCTGTCCCCTTTAGTTGCTACGCCTGTGTCCGCGAGGACATATAATGAACAACAGATTAAGCCACGTAAAGATGTTAAATCTAAGGTTTCGAGGTCCCTTTCAATTCCTGCACGAAATGTTGTTATCGTAAGATCCGTCTCTTTTGTTACCCGCAATGAACAAGAACAACAAGATACAAATGACGATCAAATAACTCCTGCGCCGGTAGAAGTTACTGCCGATGAAGAAATTCCTGAAGAGGAAGCGGTGTGCAGGATATGTCTCGACGCATGCGATGAAAGAAATACCTTTAAAATGGAATGCCGTTGCAAAGGTGGTCTAGATTTGGTGCATGAAGAATGCTTAATCAAATGGTTCAACACAAAAGGAAACAAGAAATGTGATATATGCTTGGAAGAGGTTCAGAACTTACCGGTAACCTTGCTCCGCATACCCAGCTCCGTTCAACAAAGAAACAGACAGTTGCAGGATCGCCAAACCTTAAATTCAGAGACACTAAGTGCTTGGCAAGACTTTGTGGTGCTTGTCCTGATAAGCACAATATGCTATTTTTTCTTCCTTGAACAACTACTGCTTCCTGATTTGAAGACTCAAGCTCTCATTTTATCGGCACCGTTTTCCTTTACATTGGGCCTCTTAGCATCTGTTTTTGCAATCGTCCTTGCAATCAAAGAGTATATATGGACATACGCCGCTCTTGAGTTTGCACTTGTGGCTTTAACTGTGCATCTGTTTTATACTTATTTCCATTTGGCGGCCATTTATTCGATACTACTTTCATCGATTTTGGGTTTTGGAGTTGCTATGGGAATCAACTATTTGTATATCCAGTATGTGACATGGAGATTTCAGATCTCTACTAATGATACTCCCGTATGA 1272 0.43 MQDQQPLATHEPPMVSHQTETGLNKEVADSGAGGKRPDISLQVPPRPLGFGSGSTRGRVLDHSQSFSKVISSPKDFLRALSFKRKENVVDGESSSLLNSDPKPAADSTRMASISEVSWSRCTSLPVSHAPNLSPLVATPVSARTYNEQQIKPRKDVKSKVSRSLSIPARNVVIVRSVSFVTRNEQEQQDTNDDQITPAPVEVTADEEIPEEEAVCRICLDACDERNTFKMECRCKGGLDLVHEECLIKWFNTKGNKKCDICLEEVQNLPVTLLRIPSSVQQRNRQLQDRQTLNSETLSAWQDFVVLVLISTICYFFFLEQLLLPDLKTQALILSAPFSFTLGLLASVFAIVLAIKEYIWTYAALEFALVALTVHLFYTYFHLAAIYSILLSSILGFGVAMGINYLYIQYVTWRFQISTNDTPV 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi450g00020 423 PANTHER OS02G0165000 PROTEIN 61 419 - -
Vivi450g00020 423 MobiDBLite consensus disorder prediction 1 58 - -
Vivi450g00020 423 CDD RING_CH-C4HC3_MARCH 215 261 - -
Vivi450g00020 423 Pfam RING-variant domain 215 261 IPR011016 GO:0008270
Vivi450g00020 423 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 201 269 IPR013083 -
Vivi450g00020 423 ProSiteProfiles Zinc finger RING-CH-type profile. 207 268 IPR011016 GO:0008270
Vivi450g00020 423 SUPERFAMILY RING/U-box 211 264 - -
Vivi450g00020 423 SMART ringv_2 214 262 IPR011016 GO:0008270
Vivi450g00020 423 MobiDBLite consensus disorder prediction 1 25 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi450g00020 201 322 C3H Transcription Factor Family AT2G37950 25.954 4.80e-08 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi450g00020 - - gmx:100527094 633.254