Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi450g00004 ATGGGTTGTGTGTTTGGTAAAGAGTCATTGGTGGAGGAGAGGAGAGAGGAAGTGAGAGAAGAGAAGGTAGATGTGGGTGGTGGTGGTGGAGAGGTTGAGAATGTGAAAGAGGGTGGAGAGGAGAAGAGAGTGAGGCATGGTGGGGAGAGAAGAAGGCGATCTTCGAAGGCGAATCCGAGGTTGAGTAATCCTTCTAACAATGTTCATGGTGAACAGGTTGCTGCTGGTTGGCCTTCTTGGCTTTCTAAGGTTGCTGGTGAAGCTATCAATGGTTTGGTTCCTAGGAGGGCTGATACTTTTGAGAAGCTTGATAAGATTGGGCAAGGTACATATAGCAATGTTTACAAGGCTAGGGATACTTTAACAGGGAAGATTGTTGCTCTAAAGAAGGTTCGTTTCGATAATTTAGAGCCCGAGAGTGTGAAGTTTATGGCTAGAGAGATTCTGATTCTGCGTCGGTTGGATCATCCCAATGTTGTTAAACTTGAAGGCTTGGTGACTTCTAGAATGTCGTGTAGTTTATATCTTGTGTTTGAATATATGGCTCATGATTTGGCTGGACTCGCTACAAACCCTGCGATTAAGTTCACAGAGCCTCAGGTAAAATGTTACATGCATCAACTATTTTCTGGGCTGGAACACTGTCACAACCGTCACGTGCTGCATCGTGATATAAAGGGTTCAAATCTTCTTATTGACAACGATGGAATTCTCAAGATTGCTGATTTTGGATTAGCTTCCTTCTTTGATCCTGATCACAAGCACCCGATGACAAGTAGAGTGGTGACTTTATGGTATCGGCCTCCTGAGCTCCTTCTTGGAGCCACTGAGTATGGCGTAGGAGTGGACCTCTGGAGTGCTGGCTGCATTCTTGCAGAATTGTTGGCTGGGAAACCTATCATGCCTGGTCGAACCGAGGTGGAGCAACTGCATAAGATATTTAAGCTATGTGGTTCTCCTTCTGAAGAATATTGGAAAAAGTCAAAGCTTCCACATGCTACTATTTTTAAACCACAACAATCATACAAGCGATGCATAGTCGAGACTTTTAAGAATTTTCCACCGTCATCCCTGCCACTGATCGAGACCCTTCTCGCAATTGATCCAGATGAACGGCTAACCGCCACTGCTGCATTGCATAGTGAATTCTTTATTACAAAGCCTTATGCCTGTGATCCATCTAGCCTTCCTAAATATCCTCCCAGCAAGGAGATGGATGCGAAACTACGCGACGAAGAAGCTAGAAGATTGAGAGCAGCTGGTAGATCGAATGCTGATGGTGTCAAGAAATCCCGCCCACGTGAGCGAGTAGGGAGAGGACTTCCCGGTCCCGACGCCAATGCCGAACTGCAAGCAAACATCGATAGACGGCGATTGATCACGCACGCCAATGCTAAAAGCAAGAGTGAAAAATTTCCACCTCCACACCAAGACGGAGCTCTAGGTTATCCTCTCGGCTCTTCTCAACACATGGATCCCATGTTCGATCCACCGGACGTTCCATTCAGTTCCACAAACTTGTCACTACCAAAAACAAACATCCATACATGGTCCGGCCCATTGATAGACCCTGGCAGCGTCGGTGCACCGAGGCGAAAGAAGAAACATGGCAGCTTTCATTCAGGAGAGATGAACAATGTGACATAG 1647 0.4633 MGCVFGKESLVEERREEVREEKVDVGGGGGEVENVKEGGEEKRVRHGGERRRRSSKANPRLSNPSNNVHGEQVAAGWPSWLSKVAGEAINGLVPRRADTFEKLDKIGQGTYSNVYKARDTLTGKIVALKKVRFDNLEPESVKFMAREILILRRLDHPNVVKLEGLVTSRMSCSLYLVFEYMAHDLAGLATNPAIKFTEPQVKCYMHQLFSGLEHCHNRHVLHRDIKGSNLLIDNDGILKIADFGLASFFDPDHKHPMTSRVVTLWYRPPELLLGATEYGVGVDLWSAGCILAELLAGKPIMPGRTEVEQLHKIFKLCGSPSEEYWKKSKLPHATIFKPQQSYKRCIVETFKNFPPSSLPLIETLLAIDPDERLTATAALHSEFFITKPYACDPSSLPKYPPSKEMDAKLRDEEARRLRAAGRSNADGVKKSRPRERVGRGLPGPDANAELQANIDRRRLITHANAKSKSEKFPPPHQDGALGYPLGSSQHMDPMFDPPDVPFSSTNLSLPKTNIHTWSGPLIDPGSVGAPRRKKKHGSFHSGEMNNVT 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi450g00004 548 Gene3D Phosphorylase Kinase; domain 1 88 182 - -
Vivi450g00004 548 FunFam probable serine/threonine-protein kinase At1g54610 87 182 - -
Vivi450g00004 548 SMART serkin_6 100 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi450g00004 548 MobiDBLite consensus disorder prediction 418 449 - -
Vivi450g00004 548 MobiDBLite consensus disorder prediction 418 439 - -
Vivi450g00004 548 SUPERFAMILY Protein kinase-like (PK-like) 95 390 IPR011009 -
Vivi450g00004 548 Pfam Protein kinase domain 100 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi450g00004 548 CDD STKc_CDK9_like 100 384 - -
Vivi450g00004 548 MobiDBLite consensus disorder prediction 15 69 - -
Vivi450g00004 548 MobiDBLite consensus disorder prediction 464 490 - -
Vivi450g00004 548 ProSitePatterns Protein kinases ATP-binding region signature. 106 129 IPR017441 GO:0005524
Vivi450g00004 548 Gene3D Transferase(Phosphotransferase) domain 1 183 423 - -
Vivi450g00004 548 ProSitePatterns Serine/Threonine protein kinases active-site signature. 220 232 IPR008271 GO:0004672|GO:0006468
Vivi450g00004 548 PANTHER CELL DIVISION PROTEIN KINASE 98 390 - -
Vivi450g00004 548 ProSiteProfiles Protein kinase domain profile. 100 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi450g00004 548 FunFam probable serine/threonine-protein kinase At1g54610 183 424 - -
Vivi450g00004 548 MobiDBLite consensus disorder prediction 520 548 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi450g00004 95 422 Core Cell Cycle Gene Families AT5G10270 52.035 2.28e-118 357
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CRK7-CDK9 Vivi450g00004 Pkinase 4.1e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi450g00004 K08819 - vvo:131595530 998.808