Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi44g00078 ATGGACTACGGTAGGTTAGGATTATCCGACCCTGGAGGTTCGACTCCCTCCGAACCTATAATTCATCCCAAACCGAGATCTTCCAAGAAGAAAATCATTTTCCTCTCTCTCCTCGCCGTGTTACTCATCGTTGCCTCCGCAGTTTCCGCCGCAATGCTCACTGGAGTCCACACCCGCCGCGGAAACCAGCATAAAAATCCGTCTCTCCGACGTAATCCAACACAAGCAATCTCTCGAACTTGCAGCAAAACTCGTTTCCCTTCACTCTGCGAAACGTCTCTTCTCGAATATCCTGGATCCACAATCGCTACAGAGAAAGACCTTATCCACATTTCCCTCAACATGACGCTACAGCATCTCTCCAAAGCACTCTACTCCTCCGCCTCTATCTCCTCCACCATCGGTATGAACCCTCGCATCCGCGCCGCTTATCAAGACTGTCTCGAACTTCTTGACGACTCCGTCGACGCACTCACTCGCGCATTGACCTCCGTCGTACCTTCCTCCTCCTCCTCCAAAGGTTCCGTTAAGCCTCTTACCTCATCCTCCACTGACGATGTACTCACGTGGCTCAGTGCTGCACTTACCAACCAAGACACGTGCGCTGAGGGTTTTACCGACACCTCCGGTGCCGTGAAAGATCAGATTGCGAATAATATAAAGGACTTGTCGGAGCTAGTGAGTAATTGTTTAGCTATTTTCTCTAACTCCGGCGCCGGAGATGATTTCTCCGGTGTTCCTATACATAATAAAAGACGATTAATGACAATGCCAGAAAATGATTTTCCGATATGGTTGAGAAAACGAGAGAGAAGATTGTTGGACTTGCCGGTGTCGGCGTTACAGGCTGATGTGGTAGTTTCTAAAGACGGTAACGGAACAGTGAAAACTATATCGGAAGCTCTTAAAAAGATACCGGAGTACGGTAACCGACGCTTCATTATCTATATTAAAGAAGGAAGGTATGAAGAAGACAATTTAAAGATTGGAAGGAAGAAAACTAATGTAATGATCATGGGAGACGGAAAGGGAAAGACAGTGATCACAGGGGGCAAAAATGTTATGCAAAACTTGACCACATTTCACACTGCTTCCTTTGCTGCTAGTGGTCCAGGCTTCATTGCAAGAGACATGACATTCGAGAACTACGCCGGACCATCAAAGCACCAAGCGGTAGCCCTCCGCGTAGGATCAGACCACGCAGTGGTCTACCGCTGCAACATCATCGGATACCAAGACACAATGTATGCACATTCCAACCGTCAATTCTACCGCGAATGTGACATTTACGGTACCGTAGACTTCATATTCGGCAACGCTGCAGTTGTTTTTCAAAACTGCAGCCTCTACGCCAGAAAGCCCATGGCCCAACAGAAAAACACCATCACAGCCCAAAACAGAAAAGACCCGAATCAGAACACTGGTATATCAATCCACAACTGTAGAATCCTAGCCACACAAGACTTAGAAGCATCCAAGGGAAACTTCACAACGTATCTGGGCCGTCCATGGAAACTATACTCTAGAACGGTGTACATGTTATCATACATGGGGGATCATTTACATCCACGTGGGTGGTTAGAGTGGAATACAACATTTGCTTTAGACACATTGTATTATGGTGAATACATGAATTATGGGCCGGGTGGAGCTATTGGGAAACGGGTAACTTGGCCTGGGTTTCGGGTTATTACATCCACCGTGGAAGCTAATAGATTCACGGTGGGTCAGTTCATATCGGGCTCGACTTGGTTGCCGTCTACTGGAGTGGCATACGTAGCTGGCTTAAATACCTAA 1797 0.4725 MDYGRLGLSDPGGSTPSEPIIHPKPRSSKKKIIFLSLLAVLLIVASAVSAAMLTGVHTRRGNQHKNPSLRRNPTQAISRTCSKTRFPSLCETSLLEYPGSTIATEKDLIHISLNMTLQHLSKALYSSASISSTIGMNPRIRAAYQDCLELLDDSVDALTRALTSVVPSSSSSKGSVKPLTSSSTDDVLTWLSAALTNQDTCAEGFTDTSGAVKDQIANNIKDLSELVSNCLAIFSNSGAGDDFSGVPIHNKRRLMTMPENDFPIWLRKRERRLLDLPVSALQADVVVSKDGNGTVKTISEALKKIPEYGNRRFIIYIKEGRYEEDNLKIGRKKTNVMIMGDGKGKTVITGGKNVMQNLTTFHTASFAASGPGFIARDMTFENYAGPSKHQAVALRVGSDHAVVYRCNIIGYQDTMYAHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSLYARKPMAQQKNTITAQNRKDPNQNTGISIHNCRILATQDLEASKGNFTTYLGRPWKLYSRTVYMLSYMGDHLHPRGWLEWNTTFALDTLYYGEYMNYGPGGAIGKRVTWPGFRVITSTVEANRFTVGQFISGSTWLPSTGVAYVAGLNT 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi44g00078 598 FunFam Pectinesterase 278 596 - -
Vivi44g00078 598 SUPERFAMILY Pectin lyase-like 279 595 IPR011050 -
Vivi44g00078 598 Gene3D - 278 596 IPR012334 -
Vivi44g00078 598 SMART PMEI_2 72 233 IPR006501 GO:0004857
Vivi44g00078 598 CDD PMEI-like_3 81 236 - -
Vivi44g00078 598 ProSitePatterns Pectinesterase signature 2. 429 438 IPR033131 -
Vivi44g00078 598 PANTHER PECTINESTERASE 43 586 - -
Vivi44g00078 598 Pfam Plant invertase/pectin methylesterase inhibitor 76 233 IPR006501 GO:0004857
Vivi44g00078 598 MobiDBLite consensus disorder prediction 1 23 - -
Vivi44g00078 598 Pfam Pectinesterase 284 581 IPR000070 GO:0030599|GO:0042545
Vivi44g00078 598 NCBIfam pectinesterase inhibitor domain 60 235 IPR006501 GO:0004857
Vivi44g00078 598 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 75 235 IPR035513 -
Vivi44g00078 598 Gene3D Invertase/pectin methylesterase inhibitor family protein 73 236 IPR035513 -
Vivi44g00078 598 FunFam Pectinesterase 73 237 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi44g00078 26 597 Carbohydrate Esterase AT3G49220 66.319 0.0 786
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi44g00078 - - gmx:100808236 872.463