Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi44g00068 ATGATTATCAAGCGGGAGTTGAAATCTCAAATGCCGCGTTTGAAACGGTGTAGACTCGGTGACTCGGTTGGAGAAGATGAAGACTGCTCTTATGCTTCTAAGAAGAGGAAGACGAGCGGTTATTATTATCCTTTGAATCTTTTAGGTGATGTTGCTGCCGGTTTGATTCCGGCGAGTTTTCACGGTTTGTTGAGTGCTGGTGTATCCGAGAGGTCGTGGTGCACTCAAGTTCCGTGCTCCCCCGGTGAGGTTGAGTCGAAGGAGGAGGTGGTTCCGGTGAAGAAAAGTCAGGTTCAGCGACCGCCGCTGGTTCGAACTTCGAGAGGGCGAGTTCAGGTTCTTCCTTCTCGTTTTAATGACTCTGTTATTGATAATTGGAAGAAAGATGGGAAAACCACCTCTCGTGATTGTGAAGTTGAAGGTGAATTTGAATGCAAGAAGGACAAGGTAGTAACCAAAACTTGCAATAACAATGTTAGGAAAGGGCGTAACAGTGGGAAAATTTGTTATAAGCAGCGCAAGTATTCGGCATTGTGTGAGGACGAAGATTTTACCGTGAGTGGGAGGCGTAAGAGTTTTGGTAGAAGGAAGGATTCAGCTTTGGATGATGATGAAGATGATTTGGGGATGGGTGGGGATGAAATAGTTGGTTTGAAGGAGAATAGTGAAGAGAAGAAAGATGGGTTATATGGGCCAGAAGATTTTTATGCCTGTGATATAGTGTGGGCCAAAGCTGGGAGGAAGGAACCTCTTTGGCCAGCTGTTGTTATTGATCCTACGAAACAAGCACCTGAGTTGGTCCTAAGGTCTTTTATAGCCGATGCTGCATGTGTCATGTTTCTTGGTAATGCTGGGAATGAAAATCAAAGGGACTATGCATGGGTGAAGCATGGCATGATCTTTCCATTTATGGATTATGTTGACAGGTTTCAAGAGCAGCCTGAGTTGAGTAACTATAGTCCCTCTGACTTCCAAATGGCAATAGAGGAGGCATTTTTGGCTGACCAAGGCTTTACAGAGAAGTTGATAGATGATATAAATGCAGCAGCTTGTGCTACTGTTTATGATGATAATATTCTGAAATCCTCCTTCCGGGAGATCTGTGGTTCAAACCAGTATGGAAGAGCAGGAAAGCATTTTCTGAACCAGGATTTATGTGAAGCGTGTGGATTGACACTTTCTTACAAGATGTCAAAGAAAACGAATGGTTTGACTCCTAATGGTCAACTCCTATGTAAGACATGTGCAAGGTTAACGAAATCAAAACATTACTGTGGCATATGCAAGAAAGTTTGGAATCATTCGGATAGTGGAAGCTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTGCATGCCGAATGTGACCAGATTTCTAGAAACCATTTCAAGGATCTTGAAAGCACCGATTATTACTGCCCCACATGTAGAGGCAAGTTTGACTTTGAGTTATCTGATTCAGAAAAATCGAAGACAAAAGTCAGATCAAACCGAAACAATGGGCAGCTTGTGCCTTCAAATAAGGTGACTGTTCTCTGCAATGGTGTGCAAGGCATATATTTTCCAAGCCTACACTTAGTTGTGTGCAAGTGTGGTTTTTGTGGGACAGAAAAGCAAGCTCTTAGCGAATGGGAACGGCACACCGGTTCCAAATTAAGAAATTGGAAAACAAGTATTACTGTGAAAGACTCTAGGCTACCTTTGGAACAATGGATGCTGCAGGTTGCCGAAGTTCATGCTAATGCTCTAGTTTCTGTCAAACCTAAAAAACCTTCTTTAAAAGAAAGGAAGCAGAAGTTGCTTACCTTCTTGAAAGAGAGGTATGAACCTGTTTATGCTAAGTGGACTACAGAGCGTTGTGCTGTTTGCAGATGGGTTGAAGACTGGGACTACAATAAAATCATCATATGCAACAGATGTCAAATAGCTGTTCACCAAGAATGCTATGGAGTATTAAATGTTAAAGACTTTACATCTTGGGTCTGTAAGACCTGCGAGACACCTAAAATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCAACAGATATTGACACATTATGGGTTCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCGTTTGCTAGTGATGAGAAAATGGAACCTGCTTTGGGCATTCTAAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATTCATGGTTCCTGCACACAGTGCTGCAAATGCTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCTGGTTACCGAATGGAATTGCATTGTTCGAAGAAAAATGGGAAGACAATAACAAAAATGGTTTCATATTGTGCTTACCACAGAGCTCCAAATCCTGACAATGTTTTGATTTTGCAAACCCCTCTTGGGGTCATTTCAACCAAAAGCCTTCTTCAAAAGAAAAAAATTGGATCAAGGTTAATCTCATCTAACAGAATAAAGCAAGAAGAGACTCCTATTGATATCACTGAGCATGACCCCTTCTCTGCTGCTCGGTGTCGTATCTTTAAAAGAACAAATCATACCAGAAAGAGAGCTTCTGGTGAAGCAGTTTTTCATCAAGCGAGGGGTCACTGCCACCACCCTTTGGATGCGATACAGAGTTTAAATGCATACCGAACAGTGAAGGAGCCTCCATCTTTCTCTTCTTTCAGAGAACGACTTTACCACTTACAGAGTACCGAAAATGAACGGGTTTGCTTTGGTAGATCTGGCATACATGGATGGGGCCTCTTTGCACGTAGAAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGCGGGGAACAAGTGAGACGCAGCATTGCTGATTTGAGGGAGGCACGCTATAGAGCAGAAGGGAAAGACTGCTACCTGTTTAAGATAAGCGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAATATAGCACGACTAATCAACCATTCTTGCATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGAGATGACGAGAGCCGGATTGTACTCATTGCTAAAACCAACGTATCTTTTGGTGACGAGTTAACTTATGACTACTTATTTGATCCTGACGAGCCAGATGAATTTAAAGTCCCCTGCATGTGTAAAGCTTCGAGTTGCAGGAAATTCATGAATTAG 3150 0.4263 MIIKRELKSQMPRLKRCRLGDSVGEDEDCSYASKKRKTSGYYYPLNLLGDVAAGLIPASFHGLLSAGVSERSWCTQVPCSPGEVESKEEVVPVKKSQVQRPPLVRTSRGRVQVLPSRFNDSVIDNWKKDGKTTSRDCEVEGEFECKKDKVVTKTCNNNVRKGRNSGKICYKQRKYSALCEDEDFTVSGRRKSFGRRKDSALDDDEDDLGMGGDEIVGLKENSEEKKDGLYGPEDFYACDIVWAKAGRKEPLWPAVVIDPTKQAPELVLRSFIADAACVMFLGNAGNENQRDYAWVKHGMIFPFMDYVDRFQEQPELSNYSPSDFQMAIEEAFLADQGFTEKLIDDINAAACATVYDDNILKSSFREICGSNQYGRAGKHFLNQDLCEACGLTLSYKMSKKTNGLTPNGQLLCKTCARLTKSKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDQISRNHFKDLESTDYYCPTCRGKFDFELSDSEKSKTKVRSNRNNGQLVPSNKVTVLCNGVQGIYFPSLHLVVCKCGFCGTEKQALSEWERHTGSKLRNWKTSITVKDSRLPLEQWMLQVAEVHANALVSVKPKKPSLKERKQKLLTFLKERYEPVYAKWTTERCAVCRWVEDWDYNKIIICNRCQIAVHQECYGVLNVKDFTSWVCKTCETPKIKRECCLCPVKGGALKPTDIDTLWVHVTCAWFRPEVSFASDEKMEPALGILSIPSNSFVKICVICKQIHGSCTQCCKCSTYFHAMCASRAGYRMELHCSKKNGKTITKMVSYCAYHRAPNPDNVLILQTPLGVISTKSLLQKKKIGSRLISSNRIKQEETPIDITEHDPFSAARCRIFKRTNHTRKRASGEAVFHQARGHCHHPLDAIQSLNAYRTVKEPPSFSSFRERLYHLQSTENERVCFGRSGIHGWGLFARRNIQEGEMVLEYRGEQVRRSIADLREARYRAEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVSFGDELTYDYLFDPDEPDEFKVPCMCKASSCRKFMN 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi44g00068 1049 Pfam PHD-finger 424 476 IPR019787 -
Vivi44g00068 1049 Gene3D - 232 338 - -
Vivi44g00068 1049 ProSiteProfiles Zinc finger PHD-type profile. 422 478 IPR019787 -
Vivi44g00068 1049 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 611 667 IPR013083 -
Vivi44g00068 1049 Gene3D SET domain 809 1049 IPR046341 -
Vivi44g00068 1049 SUPERFAMILY FYVE/PHD zinc finger 617 681 IPR011011 -
Vivi44g00068 1049 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 668 787 IPR013083 -
Vivi44g00068 1049 FunFam Histone-lysine N-methyltransferase 882 1049 - -
Vivi44g00068 1049 CDD SET_SETD1-like 894 1045 - -
Vivi44g00068 1049 Pfam SET domain 918 1023 IPR001214 GO:0005515
Vivi44g00068 1049 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 419 479 IPR013083 -
Vivi44g00068 1049 ProSitePatterns Zinc finger PHD-type signature. 619 664 IPR019786 -
Vivi44g00068 1049 SUPERFAMILY SET domain 901 1046 IPR046341 -
Vivi44g00068 1049 SUPERFAMILY Tudor/PWWP/MBT 230 334 - -
Vivi44g00068 1049 ProSiteProfiles Zinc finger PHD-type profile. 616 667 IPR019787 -
Vivi44g00068 1049 FunFam Histone-lysine N-methyltransferase 668 787 - -
Vivi44g00068 1049 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1049 IPR025780 -
Vivi44g00068 1049 CDD PHD_ATX3_4_5_like 618 664 IPR042011 -
Vivi44g00068 1049 SMART set_7 907 1030 IPR001214 GO:0005515
Vivi44g00068 1049 PANTHER PHD FINGER PROTEINS 65 512 - -
Vivi44g00068 1049 SMART PHD_3 729 785 IPR001965 -
Vivi44g00068 1049 SMART PHD_3 424 476 IPR001965 -
Vivi44g00068 1049 SMART PHD_3 618 665 IPR001965 -
Vivi44g00068 1049 ProSiteProfiles Post-SET domain profile. 1033 1049 IPR003616 -
Vivi44g00068 1049 Pfam PHD-finger 631 665 - -
Vivi44g00068 1049 ProSiteProfiles SET domain profile. 907 1024 IPR001214 GO:0005515
Vivi44g00068 1049 Pfam PWWP domain 239 331 IPR000313 -
Vivi44g00068 1049 ProSiteProfiles Extended PHD (ePHD) domain profile. 670 785 IPR034732 -
Vivi44g00068 1049 CDD ePHD_ATX3_4_5_like 673 784 IPR041955 -
Vivi44g00068 1049 CDD PWWP_AtATX3-like 239 340 - -
Vivi44g00068 1049 SUPERFAMILY FYVE/PHD zinc finger 423 479 IPR011011 -
Vivi44g00068 1049 Pfam PHD-zinc-finger like domain 672 784 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi44g00068 619 784 C2H2 Transcription Factor Family AT3G14740 34.682 1.16e-21 95.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vivi44g00068 zf-HC5HC2H_2 6.1e-27 CL0390