Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi44g00062 ATGAACATTCCCAAACCCATTCTCATCCTAATCTGTTTCCATTTCCTCTTCAACAGTCATCAAACACAAACACTGGCACAAGCACAAGCAGCCATAGAAACATGCTTAGACACTGGTTGCCACACAAATCAACCACTAATCCGATTCCCATTCTACATAGAAACAAAACAAGCAAACAACACATGTGGCTACCCAGGTTTCAAACTACTATGCAACAAAAATGAAAAAAACCAAACACTCCTCAATCTACCTTACATGGAAGTACTCAACATCCAAAAAATAAACTACGCAACACAAGAACTTTATGTGAATGATCCCAATAACTGTCTTCCAAAACGACTTCTCTCACTTAACCTCTCAGCTTCTCCTTTCCATCCCGTTTACAATCAACAATTCACCTTTTTTAAATGCTCCTTTAATTTGAAACATCTCACGTCTCGTTACAAACCAATAGCCTGTCTAAGTGATTCTCCCAAGTACAACGTTTTCGCGACACCGTCGCTTACGGTGTTTTTGCACTTGTCGTCTGTTTGTGACATAGTTGACACCGTGAATGTGCCGGTTCAATCGCCGTTTTATGATCAGGTGTTGTCGTCGGAACTCAAGGATGATATTCGGTTGACGTGGAATTCGCCGTCGTGTGGGAGGTGTGAGTCTCACGGTGGAAGATGTGGCTTCCAAGATAACTCAACTCTTGAAATTGCTTGTTACAATATCCCTTCAAGACAAGGGATTTCCCGTGGTGTAAGTTACACCATAGCCATATGTGTAGGAGTACCAACACTGTTATGTTTCATATCGATATTGAGTTGGATATGCAGCAAGTTCAGATTTAGGATCCATGGTTGGACTTGGGCTCCTGAGACGGTGGCAGATTTTGAATCTCTTATTGATCCACAACAATACAACAACATTTTGGGTCTTGATAAACCTACAATTGAATCTTACCCAAAAATAGTTATAGGTGATGATGGCATTCACTTACCAAGACCTAATGATAAGACATGCTCAATATGCTTGTCTGAGTATATGCCTAAAGAGACAGTGAAATCTATGCCTGAATGTGAACATTGCTTTCACGCGCAATGCATCGATGAATGGCTTCCACTGAATGCGTCATGTCCGATATGTCGAACTTCTCCCCCATGGTTACCATCACAAAATCTAGCTCAATCATGA 1179 0.4114 MNIPKPILILICFHFLFNSHQTQTLAQAQAAIETCLDTGCHTNQPLIRFPFYIETKQANNTCGYPGFKLLCNKNEKNQTLLNLPYMEVLNIQKINYATQELYVNDPNNCLPKRLLSLNLSASPFHPVYNQQFTFFKCSFNLKHLTSRYKPIACLSDSPKYNVFATPSLTVFLHLSSVCDIVDTVNVPVQSPFYDQVLSSELKDDIRLTWNSPSCGRCESHGGRCGFQDNSTLEIACYNIPSRQGISRGVSYTIAICVGVPTLLCFISILSWICSKFRFRIHGWTWAPETVADFESLIDPQQYNNILGLDKPTIESYPKIVIGDDGIHLPRPNDKTCSICLSEYMPKETVKSMPECEHCFHAQCIDEWLPLNASCPICRTSPPWLPSQNLAQS 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi44g00062 392 CDD RING-H2_EL5-like 336 378 - -
Vivi44g00062 392 ProSiteProfiles Zinc finger RING-type profile. 336 378 IPR001841 -
Vivi44g00062 392 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 8 381 IPR046948 -
Vivi44g00062 392 Pfam Wall-associated receptor kinase galacturonan-binding 35 105 IPR025287 GO:0030247
Vivi44g00062 392 SUPERFAMILY RING/U-box 330 382 - -
Vivi44g00062 392 Pfam Wall-associated receptor kinase C-terminal 183 237 IPR032872 -
Vivi44g00062 392 SMART ring_2 336 377 IPR001841 -
Vivi44g00062 392 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 298 382 IPR013083 -
Vivi44g00062 392 Pfam Ring finger domain 335 378 IPR001841 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi44g00062 33 381 C3H Transcription Factor Family AT2G46495 34.844 3.60e-60 196
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi44g00062 - - vvo:131661310 731.48