Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi44g00054 ATGACTTTTCAGCAAGATAAGTTTGTTAGATTTCAGGACTGGAATTCGGATGTGAACTCTCCTAGAATTCACGTGACGCGTTCAGGGAGAATTAGGACTACACTGAAATCGGTTTCTATGAAGTTTCAAAGGGGGTTTGAATCTAGTTCTGAGAGGATAAAGGGATTTGCGAAGCCGTTCAAATCATTTTCCCACCACAGTTTGCTTACTAGATCTTTTAGTTCTAGAAAGAAAATCCTTGACCCACAGGGTCCGTTTCTTCAAAAATGGAACAAAATATTTGTGTTATCTTGTCTTATTGCTGTATCAATTGATCCTTTGTTCTTCTATATCCCTGTGATTGATGATGACAAGAAATGTCTTTCGCGAGATAGAAAAATGGAAACTACGGCAACTGTTTTAAGGTCTTTCTCTGATATTTTTTATATTACCCATATAATTTTCCAATTTCGTACGGGATTCATTGCTCCTTCTTCTCGAGTATTTGGAAGAGGTGTTTTGGTTGAGGATTCATGGGCAATAGCAAAGAGATATATGTCATCGTACTTCTTAATTGACATTCTTGCCGTTCTTCCCCTCCCACAGGCGGTGATTCTATTTATCATTCCAAAGATGAGAGGCTCAAAATCATTGAACACCAAAAATTTGCTGAAATTTATTGTCTTCTTTCAATATGTGCCACGGTTTGTGCGGATAGCTCCACTATATAAAGAAGTTACAAGGACCTCTGGCATTCTCACAGAAACAGCATGGGCTGGAGCTGCATTCAACCTCTTTCTTTACATGCTCGCAAGTCATGTTCTTGGTGCCTTTTGGTACTTGTTTTCTATTGAAAGAGAAGCCACATGCTGGCAAAGTGCATGTCGAAAAAATAGCACCTGTATAAAGGCTCAAATGTATTGTGATGATCATCATGGTTTGAGCACAATTACAACATTCCTAAATGAATCATGCCCTATACAGAATCCAAATACAACACTCTTTAATTTTGGAATTTTCCTTGATGCCCTTCAATCTGGAGTTGTGGGGTCAACCGACTTTCCACAGAAATTTTTTTATTGCTTTTGGTGGGGTCTAAAGAATTTGAGTTCTCTTGGTCAGAATCTGGCAACAAGTACTTTTGTTTGGGAAATCTGCTTTGCAATTTTCATTTCCATTGCTGGTTTGGTATTATTTGCATTCCTCATTGGAAATATGCAGACATATTTGCAGTCAACAACTACGAGATTGGAGGAGATGAGAGTGAAAAGAAGAGACGCGGAACAGTGGATGTCTCATCGACTACTTCCTGACAGCTTGAGAGAAAGAATCAGACGACACGAGCAATACAAATGGCAAGAAACCAGAGGAGTTGATGAAGACAACTTGATTCGCAATCTTCCCAAGGATTTGAGAAGAGACATCAAGCGACATCTTTGCTTGGCTTTACTGATGAGGGTGCCAATATTTGAGAAAATGGACGAGCAGCTTTTGGATGCAGTATGTGACTGCCTCAAACCAGTACTTTATACAAAAGAAAGCTGCATTGTCCGCGAAGGAGATCCTGTCGATGAAATGCTTTTCATAATGCGTGGCAAACTATTGACTGTGACAACAAACGGTGGAAGAACAGGTTTCTTTAACTCTGAATACCTCGGAGCTGGTGACTTCTGTGGAGAGGAGCTTCTCACCTGGGCATTAGACCCTCGTTCCTCAGGAAATCTTCCCATCTCAACTAGGACTGTCCGAACACTTTCAGAAGTGGAAGCATTCGCTCTAAAAGCTGAGGATTTGAAGTTTGTTGCATCACAATTTAGGCGCCTTCACAGTAAGCAGCTTCGTCACACTTTTAGGTTTTACTCCCAACAATGGCGGACATGGGCTGCATGTTTCATACAAGCAGCTTGGAGGCGCTATTGTAAAAAGAAGCTTGAAGAATCTCTTAGAGAGGAGGAAAATAGATTGCAAGATGCATTGGCCAAGGAAGGTGGTAGTTCACCTAGCTTAGGTGCTACGATATATGCTTCAAGATTTGCTGCTAATGTGCTTCGAGCTATTCGAAGAAATGGCACAAGGAAGACGAGGGTGCCAGAGAGGCTACCTCCAATGATGCTCCAGAAGCCTGCTGAACCTGATTTTACTGCTGAAGAGCAATAG 2136 0.411 MTFQQDKFVRFQDWNSDVNSPRIHVTRSGRIRTTLKSVSMKFQRGFESSSERIKGFAKPFKSFSHHSLLTRSFSSRKKILDPQGPFLQKWNKIFVLSCLIAVSIDPLFFYIPVIDDDKKCLSRDRKMETTATVLRSFSDIFYITHIIFQFRTGFIAPSSRVFGRGVLVEDSWAIAKRYMSSYFLIDILAVLPLPQAVILFIIPKMRGSKSLNTKNLLKFIVFFQYVPRFVRIAPLYKEVTRTSGILTETAWAGAAFNLFLYMLASHVLGAFWYLFSIEREATCWQSACRKNSTCIKAQMYCDDHHGLSTITTFLNESCPIQNPNTTLFNFGIFLDALQSGVVGSTDFPQKFFYCFWWGLKNLSSLGQNLATSTFVWEICFAIFISIAGLVLFAFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPDSLRERIRRHEQYKWQETRGVDEDNLIRNLPKDLRRDIKRHLCLALLMRVPIFEKMDEQLLDAVCDCLKPVLYTKESCIVREGDPVDEMLFIMRGKLLTVTTNGGRTGFFNSEYLGAGDFCGEELLTWALDPRSSGNLPISTRTVRTLSEVEAFALKAEDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYCKKKLEESLREEENRLQDALAKEGGSSPSLGATIYASRFAANVLRAIRRNGTRKTRVPERLPPMMLQKPAEPDFTAEEQ 711
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi44g00054 711 SUPERFAMILY cAMP-binding domain-like 411 604 IPR018490 -
Vivi44g00054 711 SMART cnmp_10 482 613 IPR000595 -
Vivi44g00054 711 Gene3D Helix hairpin bin 408 473 - -
Vivi44g00054 711 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 64 706 - -
Vivi44g00054 711 ProSiteProfiles cAMP/cGMP binding motif profile. 482 565 IPR000595 -
Vivi44g00054 711 Pfam Cyclic nucleotide-binding domain 502 593 IPR000595 -
Vivi44g00054 711 Gene3D Jelly Rolls 480 600 IPR014710 -
Vivi44g00054 711 Coils Coil 634 654 - -
Vivi44g00054 711 MobiDBLite consensus disorder prediction 684 711 - -
Vivi44g00054 711 CDD CAP_ED 482 613 IPR000595 -
Vivi44g00054 711 FunFam Cyclic nucleotide-gated ion channel 1 409 473 - -
Vivi44g00054 711 FunFam Cyclic nucleotide-gated ion channel 1 480 598 - -
Vivi44g00054 711 Pfam Ion transport protein 90 409 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vivi44g00054 711 Gene3D - 92 406 - -
Vivi44g00054 711 SUPERFAMILY Voltage-gated potassium channels 81 404 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi44g00054 1 710 Ion Channels AT5G53130 79.248 0.0 1160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi44g00054 K05391 - gmx:100817516 1253.81