LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi44g00027	ATGGAACAACAACATCATCATCATCAGCAGCAACAACAACCTAGTATCCTATGCAAATACACAGAACATCACACAGTTACAAAAAAACTCATCACAACTAAGAAAACCGCAAACAGCAACAAAACAAACTCAACTATATACCCAAGAGTCGTGCAAATATCAGTCACCGACCCGGATGCCACTGACTCGTCCAGCGACGAAGAAGAAAGTTTCTCCAGAAAAAGAACAAAGCGTTATATCCACCGTGTTGAAATCGAAACCGCCGCTAAAGCCGTCGTTAATCGAAAAAGACCTGCCGGAGAAGCATCTACTGTTAAAAGGCCGGCGAAAGTTCCTGTTGTCATCAGTGGTAGAAAGTTCCGTGGTGTACGGCAGAGGCCATGGGGGAAATGGGCTGCTGAGATTCGCGATCCTGCTCGGAGAGTACGGCTTTGGTTAGGTACTTTCGAAACTGCAGAAGAAGCTGCTATGGTGTACGACAATGCCGCCATTAAGCTTCGTGGACCCGATGCTTTGACAAACTTTATCACACCGCCGCAGAGAGAAAACCCGGTAGAACCAGAACCCTCCGCCGTTAAAACTGAAATGAAGGTAATCATCGACGCCGACACCGACAACAACGCAGAAGCTTCTGGTTCTGGTAACTCCGGTTATGATTCCGGCGAAGATCGTTGTGTTCCTCTCTCTTCACCCACTTCAGTTTTAAATTTCCGAACTAACTCCGGCGAGTCGGAGGAGCAAAACCAAGTATGTGAAGTTTTCAGGGAATGTCAAGGTGAGACTAACTTGTTAGACGAAACGGCGTCGTTTTTTGAACACGAGTTTCCTATGCCTTGTTGGGACGACTTGTTCAACTTCGAAACACCAGAGTTTCCTATGATGTTTGAAGAAGAACAAAACACAATGTTTGGGGAAAGTACGACGCCGTTTTTGTGTGACCAAGAATTAAACGACAGCATTGTTCTTGCTGACTCACTCATAGATTTCGACAAAGCTTGTTTCTCTTCTCCTTCTTCATCGTTATGCCAAGTGGATGATTTCTTCCAAGATATTTTGTTAGGCTCGGATCCTCTAGTTGTCCTTTGA	1086	0.453	MEQQHHHHQQQQQPSILCKYTEHHTVTKKLITTKKTANSNKTNSTIYPRVVQISVTDPDATDSSSDEEESFSRKRTKRYIHRVEIETAAKAVVNRKRPAGEASTVKRPAKVPVVISGRKFRGVRQRPWGKWAAEIRDPARRVRLWLGTFETAEEAAMVYDNAAIKLRGPDALTNFITPPQRENPVEPEPSAVKTEMKVIIDADTDNNAEASGSGNSGYDSGEDRCVPLSSPTSVLNFRTNSGESEEQNQVCEVFRECQGETNLLDETASFFEHEFPMPCWDDLFNFETPEFPMMFEEEQNTMFGESTTPFLCDQELNDSIVLADSLIDFDKACFSSPSSSLCQVDDFFQDILLGSDPLVVL	361

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi44g00027	361	CDD	AP2	119	175	IPR001471	GO:0003700\|GO:0006355
	Vivi44g00027	361	Pfam	AP2 domain	119	168	IPR001471	GO:0003700\|GO:0006355
	Vivi44g00027	361	FunFam	Ethylene-responsive transcription factor 2	118	177	-	-
	Vivi44g00027	361	ProSiteProfiles	AP2/ERF domain profile.	119	176	IPR001471	GO:0003700\|GO:0006355
	Vivi44g00027	361	Gene3D	AP2/ERF domain	118	177	IPR036955	GO:0003700\|GO:0006355
	Vivi44g00027	361	PANTHER	SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR	48	265	-	-
	Vivi44g00027	361	PRINTS	Ethylene responsive element binding protein signature	142	158	IPR001471	GO:0003700\|GO:0006355
	Vivi44g00027	361	PRINTS	Ethylene responsive element binding protein signature	120	131	IPR001471	GO:0003700\|GO:0006355
	Vivi44g00027	361	SMART	rav1_2	119	182	IPR001471	GO:0003700\|GO:0006355
	Vivi44g00027	361	MobiDBLite	consensus disorder prediction	205	225	-	-
	Vivi44g00027	361	SUPERFAMILY	DNA-binding domain	119	175	IPR016177	GO:0003677

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vivi44g00027	18	353	AP2-EREBP Transcription Factor Family	AT4G27950	37.705	3.83e-57	187

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Vivi44g00027		AP2	4.8e-13	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi44g00027	-		-	gmx:100807598	335.88