Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi44g00021 ATGGTGTACTGTGATCACTGTGTCAGAAACGTTCATGGACAGCGAATCGACGACAGTGTGTTATGTTGTGAGGACTGTGGGAAGGTGTTGGAAGATTACTATTTTTCTCAGGAGGCAACTTTTGTGAAAACTGCTGGTGGAAAGAGCCAATTATCAGGCAATTTTGTAAATGGGGTTCGTGTTGGAATTTCCGAATCACGTGCAAGGACTTTAGATAAAGCTAGAGATTTTATGAAAAATCTAAGTGTCGGCCTTGGAGTGGAAGATAATAGTATAGTTGAGGAAGCTTTGGCCTTTTATACAATAGCACTAGAGAAAAATTTTACAAAGGGACGTAGATCAGAACAAGTACAAGCTTCTTGCCTCTATCTTGCATACCGGGATAAAAATAAGCCATACCTTCTTATTGATTTTTCAAATTCTTTAACGACAAATGTTTATGTGCTCGGCGCAGTTTTTTTGCAGCTTTGTAAAGTGTTAAGGCTTGAAAATCATCCGATTGTTCAAAAGCTTGTTGACCCCAGTCTTTTTATTTACAAATTTACAAATAATTTGTTAAAGCAAAGGAATGTGCCTGTCTCTGAAACTGCACTGAATATTATTGCCAGCATGAAACGTGACTGGATGCAGACAGGGAGGAAGCCTAGCGGATTATGCGGTGCAGCATTATACATGTCTGCTCTTGCACATGGGTTTACATGCTCTAAGTCAGATATTCTAAGAATCGTCCATGTATGTGAAGCAACATTGACCAAGCGGCTGGTAGAGTTTGAGAATACAGAGTCCTCCAGTCTGACAATTGATGAGTTGAATGCAATGGCAAAAGAGCATGAAAAAACTCCAATTAAAATACCAAATGGTGAACTGAACAAATGTAATTCAGAGGATCAAGAACTACTGTGTGAACACAAGGGTAGTGGAATGCCCTATTTTGCACTTGGATTATGTGAAGCATGTTACAGGGATTTTGATACACTCTCTGGTGGACTTGATGGTGGTTTAGATCCTCCTGCATTCCAGCGTGCTGAGAGGGATAGAATGATAAAGTCAAATTCTGAGGAGAATGCTAATAAATTGGATGATTTGGCAAAGGATTCAAATGGTGCATACGAGAGCCAAATAGAGTTTCATGCTGCCTCTGAGCCTAAAAGTATTGGGAGTGATGAAGGATATATGGCCACTAAGGACGTTGAGCATGATAAGTCACAAATAGAAGGTGACATGAATGCAAAAACTCAAGATGAATCAGAAAGTCTCTCTGATATTGATGATCAGGAGGTTGATGGCTACCTTCACAATGAGGAGGAAAAGCGTTACAAAAAAGAGATATGGGAATTTAATAATCGAGAGTATCTTGAGGAACAAGCTATCAAGGAAGCAGCTATAGCAGCTGAAATGAAAAAATTAGAGGAAGAATTAAAAAATTGTTCTCCTGAATCTCGTGCAGCAAGAGAGCTTGCTGCTGAAGCTGCTGAAGCTGTGGCAAAATCTAGAAAGGAAATGAGGCAGAAACGAGCTCTAGAGGCAAAAAGTTTGGGTCCTGCTAAATCTGCTGTAGAGGCAACGAGCCGAATGTTGAAAACAAAGAAACTCAGCTCCAAAGTCAATTATGATTCCTTGAAGAAATTATTTGAAGAACCTACATCTCCACAGAATCAAAAGAAAGTACGATTTGAGTTGCCCACAAAGGATGATGATGATAATTTGGAATTGAAGTCAGACCACAAAACAAAGAATGATGATTATGAATTGGCCGACGAATACGTGGAGGATGATATGAATGGAGAATACAATGATAATTTGTATCCAGTAAATGATTATGATGAGACATACTATGGGGAAGATGGATATGATGGTTTTATGTAA 1866 0.3907 MVYCDHCVRNVHGQRIDDSVLCCEDCGKVLEDYYFSQEATFVKTAGGKSQLSGNFVNGVRVGISESRARTLDKARDFMKNLSVGLGVEDNSIVEEALAFYTIALEKNFTKGRRSEQVQASCLYLAYRDKNKPYLLIDFSNSLTTNVYVLGAVFLQLCKVLRLENHPIVQKLVDPSLFIYKFTNNLLKQRNVPVSETALNIIASMKRDWMQTGRKPSGLCGAALYMSALAHGFTCSKSDILRIVHVCEATLTKRLVEFENTESSSLTIDELNAMAKEHEKTPIKIPNGELNKCNSEDQELLCEHKGSGMPYFALGLCEACYRDFDTLSGGLDGGLDPPAFQRAERDRMIKSNSEENANKLDDLAKDSNGAYESQIEFHAASEPKSIGSDEGYMATKDVEHDKSQIEGDMNAKTQDESESLSDIDDQEVDGYLHNEEEKRYKKEIWEFNNREYLEEQAIKEAAIAAEMKKLEEELKNCSPESRAARELAAEAAEAVAKSRKEMRQKRALEAKSLGPAKSAVEATSRMLKTKKLSSKVNYDSLKKLFEEPTSPQNQKKVRFELPTKDDDDNLELKSDHKTKNDDYELADEYVEDDMNGEYNDNLYPVNDYDETYYGEDGYDGFM 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi44g00021 621 Gene3D - 62 165 - -
Vivi44g00021 621 MobiDBLite consensus disorder prediction 543 583 - -
Vivi44g00021 621 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Vivi44g00021 621 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Vivi44g00021 621 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Vivi44g00021 621 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Vivi44g00021 621 Pfam Transcription factor TFIIB repeat 169 259 IPR013150 GO:0017025
Vivi44g00021 621 Pfam Transcription factor TFIIB repeat 68 157 IPR013150 GO:0017025
Vivi44g00021 621 Gene3D - 173 264 - -
Vivi44g00021 621 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Vivi44g00021 621 Gene3D Single helix bin 397 461 - -
Vivi44g00021 621 FunFam Transcription factor IIIB subunit 173 262 - -
Vivi44g00021 621 Pfam Brf1-like TBP-binding domain 420 545 IPR011665 -
Vivi44g00021 621 SUPERFAMILY Cyclin-like 171 262 IPR036915 -
Vivi44g00021 621 SMART cyclin_7 176 259 IPR013763 -
Vivi44g00021 621 SMART cyclin_7 76 158 IPR013763 -
Vivi44g00021 621 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 535 IPR000812 GO:0006352|GO:0070897
Vivi44g00021 621 SUPERFAMILY Cyclin-like 73 164 IPR036915 -
Vivi44g00021 621 Coils Coil 452 472 - -
Vivi44g00021 621 MobiDBLite consensus disorder prediction 557 583 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi44g00021 1 529 Inorganic Solute Cotransporters AT2G01280 43.762 3.62e-115 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi44g00021 K15196 - gmx:100789154 656.751